Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3385.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3383.1 and Xcc-8004.3385.1 overlap by 4 nucleotidesXcc-8004.3385.1 and Xcc-8004.3386.1 overlap by 4 nucleotides Xcc-8004.3383.1: Xcc-8004.3383.1 - D-mannose isomerase (EC 5.3.1.7), at 3,277,559 to 3,278,764 Xcc-8004.3383.1 Xcc-8004.3385.1: Xcc-8004.3385.1 - Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4), at 3,278,761 to 3,279,747 Xcc-8004.3385.1 Xcc-8004.3386.1: Xcc-8004.3386.1 - Predicted mannose transporter, GGP family, at 3,279,744 to 3,281,054 Xcc-8004.3386.1 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.822 kb on - strand, within Xcc-8004.3383.1at 3277.822 kb on - strand, within Xcc-8004.3383.1at 3277.863 kb on + strand, within Xcc-8004.3383.1at 3277.864 kb on - strand, within Xcc-8004.3383.1at 3277.866 kb on + strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3278.082 kb on + strand, within Xcc-8004.3383.1at 3278.082 kb on + strand, within Xcc-8004.3383.1at 3278.163 kb on + strand, within Xcc-8004.3383.1at 3278.164 kb on - strand, within Xcc-8004.3383.1at 3278.164 kb on - strand, within Xcc-8004.3383.1at 3278.187 kb on + strand, within Xcc-8004.3383.1at 3278.406 kb on + strand, within Xcc-8004.3383.1at 3278.477 kb on - strand, within Xcc-8004.3383.1at 3278.497 kb on - strand, within Xcc-8004.3383.1at 3278.526 kb on + strand, within Xcc-8004.3383.1at 3278.562 kb on + strand, within Xcc-8004.3383.1at 3278.562 kb on + strand, within Xcc-8004.3383.1at 3278.562 kb on + strand, within Xcc-8004.3383.1at 3278.613 kb on + strand, within Xcc-8004.3383.1at 3278.638 kb on - strand, within Xcc-8004.3383.1at 3278.679 kb on + strandat 3278.679 kb on + strandat 3278.679 kb on + strandat 3278.679 kb on + strandat 3278.680 kb on - strandat 3278.680 kb on - strandat 3278.680 kb on - strandat 3278.680 kb on - strandat 3279.137 kb on + strand, within Xcc-8004.3385.1at 3279.422 kb on + strand, within Xcc-8004.3385.1at 3279.422 kb on + strand, within Xcc-8004.3385.1at 3279.423 kb on - strand, within Xcc-8004.3385.1at 3279.423 kb on - strand, within Xcc-8004.3385.1at 3279.797 kb on - strandat 3279.808 kb on + strandat 3279.808 kb on + strandat 3279.808 kb on + strandat 3279.809 kb on - strandat 3279.809 kb on - strandat 3279.809 kb on - strandat 3279.814 kb on + strandat 3280.021 kb on + strand, within Xcc-8004.3386.1at 3280.022 kb on - strand, within Xcc-8004.3386.1at 3280.076 kb on + strand, within Xcc-8004.3386.1at 3280.077 kb on - strand, within Xcc-8004.3386.1at 3280.166 kb on - strand, within Xcc-8004.3386.1at 3280.177 kb on + strand, within Xcc-8004.3386.1at 3280.177 kb on + strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.229 kb on - strand, within Xcc-8004.3386.1at 3280.229 kb on - strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.435 kb on + strand, within Xcc-8004.3386.1at 3280.435 kb on + strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.471 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.717 kb on + strand, within Xcc-8004.3386.1at 3280.718 kb on - strand, within Xcc-8004.3386.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,277,821 + Xcc-8004.3383.1 0.22 +1.5
3,277,821 + Xcc-8004.3383.1 0.22 -2.2
3,277,821 + Xcc-8004.3383.1 0.22 +2.5
3,277,822 - Xcc-8004.3383.1 0.22 +0.2
3,277,822 - Xcc-8004.3383.1 0.22 +0.9
3,277,863 + Xcc-8004.3383.1 0.25 -0.8
3,277,864 - Xcc-8004.3383.1 0.25 -2.0
3,277,866 + Xcc-8004.3383.1 0.25 -1.1
3,277,867 - Xcc-8004.3383.1 0.26 -0.5
3,277,867 - Xcc-8004.3383.1 0.26 -2.5
3,277,867 - Xcc-8004.3383.1 0.26 -0.2
3,277,867 - Xcc-8004.3383.1 0.26 -0.9
3,278,082 + Xcc-8004.3383.1 0.43 -0.7
3,278,082 + Xcc-8004.3383.1 0.43 -0.5
3,278,163 + Xcc-8004.3383.1 0.50 -0.7
3,278,164 - Xcc-8004.3383.1 0.50 +0.8
3,278,164 - Xcc-8004.3383.1 0.50 +0.7
3,278,187 + Xcc-8004.3383.1 0.52 -0.8
3,278,406 + Xcc-8004.3383.1 0.70 -1.8
3,278,477 - Xcc-8004.3383.1 0.76 -0.3
3,278,497 - Xcc-8004.3383.1 0.78 +1.1
3,278,526 + Xcc-8004.3383.1 0.80 -0.0
3,278,562 + Xcc-8004.3383.1 0.83 +0.1
3,278,562 + Xcc-8004.3383.1 0.83 -0.1
3,278,562 + Xcc-8004.3383.1 0.83 -0.3
3,278,613 + Xcc-8004.3383.1 0.87 -0.1
3,278,638 - Xcc-8004.3383.1 0.89 +0.9
3,278,679 + +0.4
3,278,679 + +0.2
3,278,679 + -0.4
3,278,679 + -0.6
3,278,680 - -1.7
3,278,680 - +0.6
3,278,680 - +1.1
3,278,680 - -0.7
3,279,137 + Xcc-8004.3385.1 0.38 -0.4
3,279,422 + Xcc-8004.3385.1 0.67 -0.9
3,279,422 + Xcc-8004.3385.1 0.67 -0.8
3,279,423 - Xcc-8004.3385.1 0.67 -0.3
3,279,423 - Xcc-8004.3385.1 0.67 -2.1
3,279,797 - +0.2
3,279,808 + +3.5
3,279,808 + -1.1
3,279,808 + +1.0
3,279,809 - -1.7
3,279,809 - +0.1
3,279,809 - +6.0
3,279,814 + -1.7
3,280,021 + Xcc-8004.3386.1 0.21 +0.3
3,280,022 - Xcc-8004.3386.1 0.21 +1.1
3,280,076 + Xcc-8004.3386.1 0.25 +0.9
3,280,077 - Xcc-8004.3386.1 0.25 +1.0
3,280,166 - Xcc-8004.3386.1 0.32 +1.1
3,280,177 + Xcc-8004.3386.1 0.33 +0.8
3,280,177 + Xcc-8004.3386.1 0.33 +0.2
3,280,178 - Xcc-8004.3386.1 0.33 +0.5
3,280,178 - Xcc-8004.3386.1 0.33 -1.5
3,280,178 - Xcc-8004.3386.1 0.33 +2.5
3,280,228 + Xcc-8004.3386.1 0.37 +0.4
3,280,228 + Xcc-8004.3386.1 0.37 -1.0
3,280,228 + Xcc-8004.3386.1 0.37 -0.5
3,280,229 - Xcc-8004.3386.1 0.37 +0.5
3,280,229 - Xcc-8004.3386.1 0.37 -2.1
3,280,270 + Xcc-8004.3386.1 0.40 +0.8
3,280,270 + Xcc-8004.3386.1 0.40 +0.8
3,280,270 + Xcc-8004.3386.1 0.40 +1.1
3,280,270 + Xcc-8004.3386.1 0.40 +1.1
3,280,271 - Xcc-8004.3386.1 0.40 -1.4
3,280,271 - Xcc-8004.3386.1 0.40 -3.6
3,280,271 - Xcc-8004.3386.1 0.40 -1.3
3,280,435 + Xcc-8004.3386.1 0.53 -0.4
3,280,435 + Xcc-8004.3386.1 0.53 -0.8
3,280,436 - Xcc-8004.3386.1 0.53 +1.9
3,280,436 - Xcc-8004.3386.1 0.53 +0.8
3,280,436 - Xcc-8004.3386.1 0.53 +0.7
3,280,471 + Xcc-8004.3386.1 0.55 -0.4
3,280,645 + Xcc-8004.3386.1 0.69 +0.6
3,280,645 + Xcc-8004.3386.1 0.69 -1.3
3,280,645 + Xcc-8004.3386.1 0.69 -1.5
3,280,645 + Xcc-8004.3386.1 0.69 -1.3
3,280,717 + Xcc-8004.3386.1 0.74 -1.3
3,280,718 - Xcc-8004.3386.1 0.74 -0.7

Or see this region's nucleotide sequence