Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3381.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3380.1 and Xcc-8004.3381.1 are separated by 82 nucleotidesXcc-8004.3381.1 and Xcc-8004.3382.1 are separated by 83 nucleotidesXcc-8004.3382.1 and Xcc-8004.3383.1 are separated by 173 nucleotides Xcc-8004.3380.1: Xcc-8004.3380.1 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 3,273,165 to 3,274,304 Xcc-8004.3380.1 Xcc-8004.3381.1: Xcc-8004.3381.1 - 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13), at 3,274,387 to 3,277,143 Xcc-8004.3381.1 Xcc-8004.3382.1: Xcc-8004.3382.1 - FIG01209963: hypothetical protein, at 3,277,227 to 3,277,385 Xcc-8004.3382.1 Xcc-8004.3383.1: Xcc-8004.3383.1 - D-mannose isomerase (EC 5.3.1.7), at 3,277,559 to 3,278,764 Xcc-8004.3383.1 Position (kb) 3274 3275 3276 3277 3278Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3273.489 kb on + strand, within Xcc-8004.3380.1at 3273.524 kb on + strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.525 kb on - strand, within Xcc-8004.3380.1at 3273.558 kb on + strand, within Xcc-8004.3380.1at 3273.558 kb on + strand, within Xcc-8004.3380.1at 3273.559 kb on - strand, within Xcc-8004.3380.1at 3273.579 kb on + strand, within Xcc-8004.3380.1at 3273.766 kb on - strand, within Xcc-8004.3380.1at 3273.858 kb on + strand, within Xcc-8004.3380.1at 3273.858 kb on + strand, within Xcc-8004.3380.1at 3273.859 kb on - strand, within Xcc-8004.3380.1at 3273.859 kb on - strand, within Xcc-8004.3380.1at 3273.972 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.080 kb on + strand, within Xcc-8004.3380.1at 3274.187 kb on - strand, within Xcc-8004.3380.1at 3274.187 kb on - strand, within Xcc-8004.3380.1at 3274.187 kb on - strand, within Xcc-8004.3380.1at 3274.276 kb on + strandat 3274.358 kb on - strandat 3274.817 kb on - strand, within Xcc-8004.3381.1at 3274.817 kb on - strand, within Xcc-8004.3381.1at 3274.836 kb on - strand, within Xcc-8004.3381.1at 3274.903 kb on + strand, within Xcc-8004.3381.1at 3274.978 kb on - strand, within Xcc-8004.3381.1at 3275.002 kb on + strand, within Xcc-8004.3381.1at 3275.003 kb on - strand, within Xcc-8004.3381.1at 3275.061 kb on + strand, within Xcc-8004.3381.1at 3275.061 kb on + strand, within Xcc-8004.3381.1at 3275.141 kb on + strand, within Xcc-8004.3381.1at 3275.141 kb on + strand, within Xcc-8004.3381.1at 3275.142 kb on - strand, within Xcc-8004.3381.1at 3275.142 kb on - strand, within Xcc-8004.3381.1at 3275.302 kb on + strand, within Xcc-8004.3381.1at 3275.944 kb on + strand, within Xcc-8004.3381.1at 3275.944 kb on + strand, within Xcc-8004.3381.1at 3275.945 kb on - strand, within Xcc-8004.3381.1at 3275.945 kb on - strand, within Xcc-8004.3381.1at 3275.945 kb on - strand, within Xcc-8004.3381.1at 3276.157 kb on + strand, within Xcc-8004.3381.1at 3276.157 kb on + strand, within Xcc-8004.3381.1at 3276.157 kb on + strand, within Xcc-8004.3381.1at 3276.157 kb on + strand, within Xcc-8004.3381.1at 3276.157 kb on + strand, within Xcc-8004.3381.1at 3276.329 kb on - strand, within Xcc-8004.3381.1at 3276.706 kb on + strand, within Xcc-8004.3381.1at 3276.706 kb on + strand, within Xcc-8004.3381.1at 3276.707 kb on - strand, within Xcc-8004.3381.1at 3276.707 kb on - strand, within Xcc-8004.3381.1at 3276.707 kb on - strand, within Xcc-8004.3381.1at 3276.707 kb on - strand, within Xcc-8004.3381.1at 3276.799 kb on + strand, within Xcc-8004.3381.1at 3276.799 kb on + strand, within Xcc-8004.3381.1at 3276.799 kb on + strand, within Xcc-8004.3381.1at 3276.800 kb on - strand, within Xcc-8004.3381.1at 3276.800 kb on - strand, within Xcc-8004.3381.1at 3276.855 kb on + strand, within Xcc-8004.3381.1at 3277.000 kb on + strandat 3277.001 kb on - strandat 3277.001 kb on - strandat 3277.001 kb on - strandat 3277.024 kb on + strandat 3277.025 kb on - strandat 3277.066 kb on + strandat 3277.130 kb on - strandat 3277.211 kb on - strandat 3277.220 kb on + strandat 3277.220 kb on + strandat 3277.221 kb on - strandat 3277.229 kb on - strandat 3277.453 kb on - strandat 3277.483 kb on + strandat 3277.483 kb on + strandat 3277.483 kb on + strandat 3277.593 kb on + strandat 3277.594 kb on - strandat 3277.594 kb on - strandat 3277.594 kb on - strandat 3277.650 kb on + strandat 3277.650 kb on + strandat 3277.651 kb on - strandat 3277.651 kb on - strandat 3277.680 kb on + strand, within Xcc-8004.3383.1at 3277.722 kb on + strand, within Xcc-8004.3383.1at 3277.741 kb on - strand, within Xcc-8004.3383.1at 3277.753 kb on - strand, within Xcc-8004.3383.1at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.821 kb on + strand, within Xcc-8004.3383.1at 3277.822 kb on - strand, within Xcc-8004.3383.1at 3277.822 kb on - strand, within Xcc-8004.3383.1at 3277.863 kb on + strand, within Xcc-8004.3383.1at 3277.864 kb on - strand, within Xcc-8004.3383.1at 3277.866 kb on + strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3277.867 kb on - strand, within Xcc-8004.3383.1at 3278.082 kb on + strand, within Xcc-8004.3383.1at 3278.082 kb on + strand, within Xcc-8004.3383.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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3,273,489 + Xcc-8004.3380.1 0.28 +0.9
3,273,524 + Xcc-8004.3380.1 0.31 -0.6
3,273,525 - Xcc-8004.3380.1 0.32 -1.5
3,273,525 - Xcc-8004.3380.1 0.32 -3.1
3,273,525 - Xcc-8004.3380.1 0.32 +1.2
3,273,558 + Xcc-8004.3380.1 0.34 +2.1
3,273,558 + Xcc-8004.3380.1 0.34 +1.5
3,273,559 - Xcc-8004.3380.1 0.35 +1.2
3,273,579 + Xcc-8004.3380.1 0.36 -0.1
3,273,766 - Xcc-8004.3380.1 0.53 +0.7
3,273,858 + Xcc-8004.3380.1 0.61 +1.1
3,273,858 + Xcc-8004.3380.1 0.61 +0.0
3,273,859 - Xcc-8004.3380.1 0.61 -1.1
3,273,859 - Xcc-8004.3380.1 0.61 +0.6
3,273,972 + Xcc-8004.3380.1 0.71 +0.7
3,274,080 + Xcc-8004.3380.1 0.80 -0.8
3,274,080 + Xcc-8004.3380.1 0.80 +0.0
3,274,080 + Xcc-8004.3380.1 0.80 +0.2
3,274,080 + Xcc-8004.3380.1 0.80 -0.4
3,274,187 - Xcc-8004.3380.1 0.90 +0.1
3,274,187 - Xcc-8004.3380.1 0.90 -2.3
3,274,187 - Xcc-8004.3380.1 0.90 -2.7
3,274,276 + -1.6
3,274,358 - -1.3
3,274,817 - Xcc-8004.3381.1 0.16 +0.2
3,274,817 - Xcc-8004.3381.1 0.16 +0.8
3,274,836 - Xcc-8004.3381.1 0.16 +0.2
3,274,903 + Xcc-8004.3381.1 0.19 -0.5
3,274,978 - Xcc-8004.3381.1 0.21 +2.5
3,275,002 + Xcc-8004.3381.1 0.22 +0.8
3,275,003 - Xcc-8004.3381.1 0.22 -0.0
3,275,061 + Xcc-8004.3381.1 0.24 -2.3
3,275,061 + Xcc-8004.3381.1 0.24 +0.6
3,275,141 + Xcc-8004.3381.1 0.27 -2.3
3,275,141 + Xcc-8004.3381.1 0.27 +0.8
3,275,142 - Xcc-8004.3381.1 0.27 +1.4
3,275,142 - Xcc-8004.3381.1 0.27 +0.5
3,275,302 + Xcc-8004.3381.1 0.33 -0.7
3,275,944 + Xcc-8004.3381.1 0.56 +0.6
3,275,944 + Xcc-8004.3381.1 0.56 +0.9
3,275,945 - Xcc-8004.3381.1 0.57 -0.8
3,275,945 - Xcc-8004.3381.1 0.57 +0.8
3,275,945 - Xcc-8004.3381.1 0.57 -0.4
3,276,157 + Xcc-8004.3381.1 0.64 -3.0
3,276,157 + Xcc-8004.3381.1 0.64 -0.4
3,276,157 + Xcc-8004.3381.1 0.64 -1.7
3,276,157 + Xcc-8004.3381.1 0.64 -1.3
3,276,157 + Xcc-8004.3381.1 0.64 +1.5
3,276,329 - Xcc-8004.3381.1 0.70 -1.3
3,276,706 + Xcc-8004.3381.1 0.84 -1.1
3,276,706 + Xcc-8004.3381.1 0.84 +0.3
3,276,707 - Xcc-8004.3381.1 0.84 +0.1
3,276,707 - Xcc-8004.3381.1 0.84 -0.4
3,276,707 - Xcc-8004.3381.1 0.84 -0.1
3,276,707 - Xcc-8004.3381.1 0.84 -0.1
3,276,799 + Xcc-8004.3381.1 0.87 +0.1
3,276,799 + Xcc-8004.3381.1 0.87 -1.8
3,276,799 + Xcc-8004.3381.1 0.87 +1.4
3,276,800 - Xcc-8004.3381.1 0.88 -0.1
3,276,800 - Xcc-8004.3381.1 0.88 +0.7
3,276,855 + Xcc-8004.3381.1 0.90 +0.9
3,277,000 + +0.2
3,277,001 - +0.8
3,277,001 - +0.8
3,277,001 - -1.2
3,277,024 + -1.0
3,277,025 - -1.9
3,277,066 + -0.9
3,277,130 - -1.8
3,277,211 - -0.0
3,277,220 + -0.0
3,277,220 + +0.7
3,277,221 - +0.8
3,277,229 - -0.5
3,277,453 - -1.1
3,277,483 + +1.9
3,277,483 + +0.7
3,277,483 + +1.5
3,277,593 + -0.7
3,277,594 - +1.5
3,277,594 - +0.0
3,277,594 - +0.5
3,277,650 + -3.2
3,277,650 + -3.6
3,277,651 - -0.4
3,277,651 - -1.5
3,277,680 + Xcc-8004.3383.1 0.10 -1.4
3,277,722 + Xcc-8004.3383.1 0.14 -2.8
3,277,741 - Xcc-8004.3383.1 0.15 -0.8
3,277,753 - Xcc-8004.3383.1 0.16 -0.7
3,277,821 + Xcc-8004.3383.1 0.22 +1.5
3,277,821 + Xcc-8004.3383.1 0.22 -2.2
3,277,821 + Xcc-8004.3383.1 0.22 +2.5
3,277,822 - Xcc-8004.3383.1 0.22 +0.2
3,277,822 - Xcc-8004.3383.1 0.22 +0.9
3,277,863 + Xcc-8004.3383.1 0.25 -0.8
3,277,864 - Xcc-8004.3383.1 0.25 -2.0
3,277,866 + Xcc-8004.3383.1 0.25 -1.1
3,277,867 - Xcc-8004.3383.1 0.26 -0.5
3,277,867 - Xcc-8004.3383.1 0.26 -2.5
3,277,867 - Xcc-8004.3383.1 0.26 -0.2
3,277,867 - Xcc-8004.3383.1 0.26 -0.9
3,278,082 + Xcc-8004.3383.1 0.43 -0.7
3,278,082 + Xcc-8004.3383.1 0.43 -0.5

Or see this region's nucleotide sequence