Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3161.1 and Xcc-8004.3162.1 are separated by 39 nucleotides Xcc-8004.3162.1 and Xcc-8004.3163.1 overlap by 66 nucleotides
Xcc-8004.3161.1: Xcc-8004.3161.1 - ABC transporter ATP-binding protein, at 3,079,437 to 3,081,137
Xcc-8004.3161.1
Xcc-8004.3162.1: Xcc-8004.3162.1 - FIG01211092: hypothetical protein, at 3,081,177 to 3,082,265
Xcc-8004.3162.1
Xcc-8004.3163.1: Xcc-8004.3163.1 - Radical SAM domain protein, at 3,082,200 to 3,083,969
Xcc-8004.3163.1
Position (kb) 3081
3082
3083 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3080.230 kb on + strand, within Xcc-8004.3161.1 at 3080.230 kb on + strand, within Xcc-8004.3161.1 at 3080.230 kb on + strand, within Xcc-8004.3161.1 at 3080.389 kb on + strand, within Xcc-8004.3161.1 at 3080.389 kb on + strand, within Xcc-8004.3161.1 at 3080.390 kb on - strand, within Xcc-8004.3161.1 at 3080.422 kb on + strand, within Xcc-8004.3161.1 at 3080.422 kb on + strand, within Xcc-8004.3161.1 at 3080.423 kb on - strand, within Xcc-8004.3161.1 at 3080.525 kb on - strand, within Xcc-8004.3161.1 at 3080.525 kb on - strand, within Xcc-8004.3161.1 at 3080.722 kb on + strand, within Xcc-8004.3161.1 at 3080.722 kb on + strand, within Xcc-8004.3161.1 at 3080.722 kb on + strand, within Xcc-8004.3161.1 at 3080.722 kb on + strand, within Xcc-8004.3161.1 at 3080.723 kb on - strand, within Xcc-8004.3161.1 at 3080.723 kb on - strand, within Xcc-8004.3161.1 at 3080.723 kb on - strand, within Xcc-8004.3161.1 at 3080.723 kb on - strand, within Xcc-8004.3161.1 at 3080.825 kb on - strand, within Xcc-8004.3161.1 at 3080.825 kb on - strand, within Xcc-8004.3161.1 at 3080.941 kb on - strand, within Xcc-8004.3161.1 at 3081.043 kb on + strand at 3081.044 kb on - strand at 3081.268 kb on + strand at 3081.270 kb on + strand at 3081.271 kb on - strand at 3081.271 kb on - strand at 3081.328 kb on + strand, within Xcc-8004.3162.1 at 3081.329 kb on - strand, within Xcc-8004.3162.1 at 3081.835 kb on + strand, within Xcc-8004.3162.1 at 3081.836 kb on - strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3082.017 kb on - strand, within Xcc-8004.3162.1 at 3082.064 kb on - strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.490 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.701 kb on + strand, within Xcc-8004.3163.1 at 3082.884 kb on - strand, within Xcc-8004.3163.1 at 3083.104 kb on - strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.185 kb on - strand, within Xcc-8004.3163.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 3,080,230 + Xcc-8004.3161.1 0.47 +0.2 3,080,230 + Xcc-8004.3161.1 0.47 +0.9 3,080,230 + Xcc-8004.3161.1 0.47 +1.8 3,080,389 + Xcc-8004.3161.1 0.56 -0.7 3,080,389 + Xcc-8004.3161.1 0.56 -2.0 3,080,390 - Xcc-8004.3161.1 0.56 +0.8 3,080,422 + Xcc-8004.3161.1 0.58 +0.4 3,080,422 + Xcc-8004.3161.1 0.58 +0.4 3,080,423 - Xcc-8004.3161.1 0.58 -2.8 3,080,525 - Xcc-8004.3161.1 0.64 -3.0 3,080,525 - Xcc-8004.3161.1 0.64 +0.7 3,080,722 + Xcc-8004.3161.1 0.76 -0.2 3,080,722 + Xcc-8004.3161.1 0.76 +1.1 3,080,722 + Xcc-8004.3161.1 0.76 +0.4 3,080,722 + Xcc-8004.3161.1 0.76 +2.5 3,080,723 - Xcc-8004.3161.1 0.76 +0.1 3,080,723 - Xcc-8004.3161.1 0.76 -0.1 3,080,723 - Xcc-8004.3161.1 0.76 -2.0 3,080,723 - Xcc-8004.3161.1 0.76 -0.6 3,080,825 - Xcc-8004.3161.1 0.82 +0.6 3,080,825 - Xcc-8004.3161.1 0.82 -1.0 3,080,941 - Xcc-8004.3161.1 0.88 -0.7 3,081,043 + +1.0 3,081,044 - -0.3 3,081,268 + -1.0 3,081,270 + +1.5 3,081,271 - -0.1 3,081,271 - +1.9 3,081,328 + Xcc-8004.3162.1 0.14 -0.2 3,081,329 - Xcc-8004.3162.1 0.14 -0.2 3,081,835 + Xcc-8004.3162.1 0.60 +1.4 3,081,836 - Xcc-8004.3162.1 0.61 +1.5 3,081,904 + Xcc-8004.3162.1 0.67 +2.5 3,081,904 + Xcc-8004.3162.1 0.67 +2.8 3,081,904 + Xcc-8004.3162.1 0.67 +3.2 3,082,017 - Xcc-8004.3162.1 0.77 -2.2 3,082,064 - Xcc-8004.3162.1 0.81 +2.2 3,082,128 + Xcc-8004.3162.1 0.87 +1.9 3,082,128 + Xcc-8004.3162.1 0.87 +2.3 3,082,490 - Xcc-8004.3163.1 0.16 +0.8 3,082,513 - Xcc-8004.3163.1 0.18 -1.0 3,082,513 - Xcc-8004.3163.1 0.18 +2.2 3,082,701 + Xcc-8004.3163.1 0.28 -0.7 3,082,884 - Xcc-8004.3163.1 0.39 -0.7 3,083,104 - Xcc-8004.3163.1 0.51 -0.8 3,083,184 + Xcc-8004.3163.1 0.56 -1.8 3,083,184 + Xcc-8004.3163.1 0.56 -0.8 3,083,185 - Xcc-8004.3163.1 0.56 +0.9
Or see this region's nucleotide sequence