Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3027.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,957,046	+		Xcc-8004.3026.1	0.56	+1.6
2,957,057	+		Xcc-8004.3026.1	0.57	-0.1
2,957,057	+		Xcc-8004.3026.1	0.57	-0.1
2,957,057	+		Xcc-8004.3026.1	0.57	-2.1
2,957,057	+		Xcc-8004.3026.1	0.57	+1.2
2,957,057	+		Xcc-8004.3026.1	0.57	-1.8
2,957,057	+		Xcc-8004.3026.1	0.57	+0.8
2,957,057	+		Xcc-8004.3026.1	0.57	+2.5
2,957,057	+		Xcc-8004.3026.1	0.57	-0.6
2,957,057	+		Xcc-8004.3026.1	0.57	+0.2
2,957,057	+		Xcc-8004.3026.1	0.57	+0.5
2,957,057	+		Xcc-8004.3026.1	0.57	+3.1
2,957,058	-		Xcc-8004.3026.1	0.57	-0.8
2,957,058	-		Xcc-8004.3026.1	0.57	-0.4
2,957,058	-		Xcc-8004.3026.1	0.57	+0.2
2,957,058	-		Xcc-8004.3026.1	0.57	-0.2
2,957,058	-		Xcc-8004.3026.1	0.57	-2.5
2,957,058	-		Xcc-8004.3026.1	0.57	-0.1
2,957,171	+		Xcc-8004.3026.1	0.63	-0.5
2,957,171	+		Xcc-8004.3026.1	0.63	+1.7
2,957,171	+		Xcc-8004.3026.1	0.63	+0.5
2,957,172	-		Xcc-8004.3026.1	0.63	+0.3
2,957,172	-		Xcc-8004.3026.1	0.63	-1.3
2,957,172	-		Xcc-8004.3026.1	0.63	+0.8
2,957,176	+		Xcc-8004.3026.1	0.63	-0.5
2,957,177	-		Xcc-8004.3026.1	0.63	-2.2
2,957,177	-		Xcc-8004.3026.1	0.63	-0.9
2,957,177	-		Xcc-8004.3026.1	0.63	+0.5
2,957,195	+		Xcc-8004.3026.1	0.64	-0.5
2,957,217	-		Xcc-8004.3026.1	0.65	-1.3
2,957,233	+		Xcc-8004.3026.1	0.66	+1.6
2,957,233	+		Xcc-8004.3026.1	0.66	+1.3
2,957,233	+		Xcc-8004.3026.1	0.66	-1.2
2,957,234	-		Xcc-8004.3026.1	0.66	-0.9
2,957,234	-		Xcc-8004.3026.1	0.66	-0.8
2,957,234	-		Xcc-8004.3026.1	0.66	-1.0
2,957,240	+		Xcc-8004.3026.1	0.67	-0.3
2,957,240	+		Xcc-8004.3026.1	0.67	+0.1
2,957,240	+		Xcc-8004.3026.1	0.67	+0.7
2,957,240	+		Xcc-8004.3026.1	0.67	+0.5
2,957,241	-		Xcc-8004.3026.1	0.67	+0.5
2,957,249	+		Xcc-8004.3026.1	0.67	+0.9
2,957,250	-		Xcc-8004.3026.1	0.67	-0.4
2,957,250	-		Xcc-8004.3026.1	0.67	-1.3
2,957,273	+		Xcc-8004.3026.1	0.68	-1.0
2,957,273	+		Xcc-8004.3026.1	0.68	-0.2
2,957,321	+		Xcc-8004.3026.1	0.71	-0.7
2,957,321	+		Xcc-8004.3026.1	0.71	+0.2
2,957,321	+		Xcc-8004.3026.1	0.71	+0.1
2,957,321	+		Xcc-8004.3026.1	0.71	-0.6
2,957,322	-		Xcc-8004.3026.1	0.71	+0.1
2,957,322	-		Xcc-8004.3026.1	0.71	-1.7
2,957,322	-		Xcc-8004.3026.1	0.71	-0.9
2,957,401	+		Xcc-8004.3026.1	0.75	-0.4
2,957,401	+		Xcc-8004.3026.1	0.75	+0.2
2,957,401	+		Xcc-8004.3026.1	0.75	-0.1
2,957,413	+		Xcc-8004.3026.1	0.76	-1.4
2,957,413	+		Xcc-8004.3026.1	0.76	+2.3
2,957,414	-		Xcc-8004.3026.1	0.76	-0.8
2,957,414	-		Xcc-8004.3026.1	0.76	-0.7
2,957,414	-		Xcc-8004.3026.1	0.76	+0.2
2,957,414	-		Xcc-8004.3026.1	0.76	-1.2
2,957,533	+		Xcc-8004.3026.1	0.82	-0.7
2,957,534	-		Xcc-8004.3026.1	0.82	-0.3
2,957,534	-		Xcc-8004.3026.1	0.82	-2.0
2,957,616	+		Xcc-8004.3026.1	0.87	-0.6
2,957,616	+		Xcc-8004.3026.1	0.87	-2.6
2,957,617	-		Xcc-8004.3026.1	0.87	-0.5
2,957,617	-		Xcc-8004.3026.1	0.87	+0.5
2,957,617	-		Xcc-8004.3026.1	0.87	+3.1
2,957,617	-		Xcc-8004.3026.1	0.87	-0.7
2,957,625	+		Xcc-8004.3026.1	0.87	-3.2
2,957,626	-		Xcc-8004.3026.1	0.87	-0.6
2,957,626	-		Xcc-8004.3026.1	0.87	+0.8
2,957,626	-		Xcc-8004.3026.1	0.87	-0.8
2,957,704	+				+0.7
2,957,705	-				+1.3
2,957,705	-				+1.1
2,957,710	+				-1.3
2,957,710	+				+0.6
2,957,710	+				-0.3
2,957,711	-				-1.7
2,957,711	-				+1.3
2,957,711	-				+1.9
2,957,716	+				+0.3
2,957,716	+				-1.4
2,957,716	+				-1.0
2,957,716	+				-0.2
2,957,716	+				+1.8
2,957,760	-				+0.3
2,957,800	+				-0.2
2,957,800	+				+0.8
2,957,800	+				-0.5
2,957,800	+				+0.2
2,957,800	+				+0.2
2,957,801	-				-0.3
2,957,801	-				-1.2
2,957,821	+				+1.2
2,957,872	+				+0.5
2,957,898	+				+3.2
2,957,898	+				+0.4
2,957,899	-				-2.6
2,957,899	-				-0.2
2,957,899	-				-0.2
2,957,940	+				-0.1
2,958,011	+				-1.3
2,958,011	+				+1.6
2,958,011	+				+0.5
2,958,011	+				-1.7
2,958,012	-				+0.3
2,958,012	-				-1.5
2,958,021	+				-0.4
2,958,043	-				-2.2
2,958,049	+				+0.2
2,958,049	+				+0.5
2,958,049	+				+0.7
2,958,049	+				-0.1
2,958,049	+				+0.7
2,958,049	+				-0.1
2,958,050	-				+0.9
2,958,050	-				-2.2
2,958,058	-				+0.9
2,958,058	-				-1.4
2,958,093	+		Xcc-8004.3027.1	0.11	-2.0
2,958,108	-		Xcc-8004.3027.1	0.14	+1.5
2,958,108	-		Xcc-8004.3027.1	0.14	+1.7
2,958,108	-		Xcc-8004.3027.1	0.14	+1.7
2,958,108	-		Xcc-8004.3027.1	0.14	+1.0
2,958,131	+		Xcc-8004.3027.1	0.19	+0.1
2,958,131	+		Xcc-8004.3027.1	0.19	-1.1
2,958,131	+		Xcc-8004.3027.1	0.19	+1.5
2,958,132	-		Xcc-8004.3027.1	0.19	-0.1
2,958,132	-		Xcc-8004.3027.1	0.19	-1.0
2,958,450	+		Xcc-8004.3027.1	0.85	+1.8
2,958,450	+		Xcc-8004.3027.1	0.85	+3.4
2,958,451	-		Xcc-8004.3027.1	0.85	+1.2
2,958,462	+		Xcc-8004.3027.1	0.87	+0.6
2,958,462	+		Xcc-8004.3027.1	0.87	-1.6
2,958,463	-		Xcc-8004.3027.1	0.87	+0.4
2,958,463	-		Xcc-8004.3027.1	0.87	+0.2
2,958,463	-		Xcc-8004.3027.1	0.87	-0.7
2,958,463	-		Xcc-8004.3027.1	0.87	-1.7
2,958,499	+				-0.4
2,958,499	+				-1.1
2,958,499	+				+1.6
2,958,499	+				-3.2
2,958,499	+				-0.8
2,958,499	+				-2.0
2,958,499	+				-1.3
2,958,499	+				-2.8
2,958,499	+				-0.4
2,958,499	+				-1.5
2,958,499	+				+0.1
2,958,499	+				+1.6
2,958,499	+				+0.8
2,958,499	+				+1.0
2,958,499	+				+2.1
2,958,499	+				-0.4
2,958,499	+				+0.4
2,958,499	+				+0.2
2,958,499	+				+0.8
2,958,500	-				-1.1
2,958,500	-				-0.5
2,958,500	-				+0.1
2,958,500	-				+1.4
2,958,500	-				+0.3
2,958,500	-				-0.2
2,958,500	-				+0.4
2,958,500	-				-1.4
2,958,500	-				-0.8
2,958,500	-				-0.3
2,958,500	-				-1.5
2,958,500	-				-2.3
2,958,500	-				-1.5
2,958,500	-				-0.5
2,958,500	-				+0.1
2,958,500	-				-0.9
2,958,515	+				-0.1
2,958,515	+				-1.3
2,958,515	+				+0.4
2,958,515	+				-0.8
2,958,515	+				+1.7
2,958,515	+				-1.7
2,958,515	+				-1.8
2,958,515	+				+2.5
2,958,515	+				+0.7
2,958,516	-				-0.6
2,958,516	-				+2.5
2,958,516	-				+2.0
2,958,516	-				-1.7
2,958,516	-				+0.9
2,958,524	+				-1.3
2,958,524	+				-1.1
2,958,524	+				-0.9
2,958,524	+				-0.1
2,958,524	+				+0.7
2,958,524	+				+0.5
2,958,524	+				-1.5
2,958,525	-				+3.5
2,958,535	+				+0.1
2,958,535	+				+0.6
2,958,535	+				-0.1
2,958,535	+				+0.8
2,958,536	-				-1.2
2,958,536	-				-0.3
2,958,536	-				+0.6
2,958,536	-				+1.4
2,958,537	+				+0.2
2,958,537	+				-0.3
2,958,537	+				-1.2
2,958,538	-				+0.1
2,958,538	-				+0.8
2,958,547	+				+1.8
2,958,547	+				-1.4
2,958,547	+				+2.0
2,958,547	+				+1.5
2,958,548	-				+1.5
2,958,548	-				-1.1
2,958,548	-				-1.5
2,958,548	-				-0.6
2,958,548	-				-2.6
2,958,594	+				+1.9
2,958,594	+				-2.8
2,958,594	+				+1.0
2,958,595	-				+1.5
2,958,595	-				+0.7
2,958,595	-				-0.1
2,958,595	-				+0.9
2,958,595	-				+0.8
2,958,606	+				-1.1
2,958,606	+				-1.5
2,958,606	+				+0.7
2,958,606	+				-0.1
2,958,606	+				-0.4
2,958,606	+				-1.6
2,958,606	+				+0.3
2,958,606	+				+1.1
2,958,606	+				-2.2
2,958,607	-				-1.7
2,958,607	-				-0.4
2,958,607	-				-2.1
2,958,607	-				-1.1
2,958,607	-				-0.1
2,958,607	-				+0.2
2,958,607	-				+0.8
2,958,607	-				+0.9
2,958,607	-				-1.4
2,958,607	-				+0.5
2,958,615	+				-2.3
2,958,615	+				-1.0
2,958,615	+				-0.6
2,958,615	+				+1.1
2,958,615	+				-0.0
2,958,615	+				-0.5
2,958,616	-				+0.6
2,958,616	-				-0.1
2,958,636	+				-0.8
2,958,636	+				-0.7
2,958,636	+				-1.2
2,958,636	+				-2.9
2,958,636	+				+0.2
2,958,637	-				+0.2
2,958,637	-				+1.5
2,958,637	-				-1.2
2,958,637	-				+0.2
2,958,637	-				+2.3
2,958,649	+				-0.5
2,958,650	-				-1.8
2,958,656	+				-1.4
2,958,656	+				+1.7
2,958,656	+				+1.7
2,958,656	+				-0.8
2,958,656	+				-0.0
2,958,657	-				-1.3
2,958,671	+				+0.7
2,958,672	-				+0.6
2,958,680	+				-0.1
2,958,680	+				-1.6
2,958,680	+				-1.4
2,958,680	+				+0.6
2,958,681	-				+0.4
2,958,681	-				-2.8
2,958,681	-				+0.7
2,958,681	-				-0.7
2,958,681	-				+1.2
2,958,681	-				-0.5
2,958,681	-				+0.4
2,958,687	-				+0.0
2,958,687	-				+0.6
2,958,687	-				+1.2
2,958,687	-				+2.3
2,958,711	+				+0.9
2,958,711	+				-1.1
2,958,711	+				+1.5
2,958,711	+				+0.9
2,958,712	-				+0.7
2,958,712	-				+0.7
2,958,712	-				+1.1
2,958,712	-				-1.3
2,958,712	-				+0.8
2,958,712	-				+2.3
2,958,728	-				+0.3
2,958,728	-				-0.8
2,958,741	-				-1.0
2,958,741	-				-0.5
2,958,813	-				-0.3
2,958,825	+				-1.1
2,958,939	+				-0.1
2,958,939	+				+0.5
2,958,939	+				+0.5
2,958,939	+				-1.4
2,958,940	-				-0.5
2,958,940	-				-1.2
2,958,940	-				+1.8
2,958,940	-				+0.1
2,958,940	-				-1.3
2,959,050	+		Xcc-8004.3029.1	0.11	+0.1
2,959,050	+		Xcc-8004.3029.1	0.11	-0.4
2,959,050	+		Xcc-8004.3029.1	0.11	+1.7
2,959,051	-		Xcc-8004.3029.1	0.11	-0.8
2,959,051	-		Xcc-8004.3029.1	0.11	-1.8
2,959,051	-		Xcc-8004.3029.1	0.11	+0.4
2,959,051	-		Xcc-8004.3029.1	0.11	+1.1
2,959,051	-		Xcc-8004.3029.1	0.11	-1.4
2,959,281	+		Xcc-8004.3029.1	0.26	+0.4
2,959,281	+		Xcc-8004.3029.1	0.26	-0.1
2,959,281	+		Xcc-8004.3029.1	0.26	+1.5
2,959,281	+		Xcc-8004.3029.1	0.26	+0.9
2,959,281	+		Xcc-8004.3029.1	0.26	-1.1
2,959,282	-		Xcc-8004.3029.1	0.26	-1.7
2,959,282	-		Xcc-8004.3029.1	0.26	-3.2
2,959,282	-		Xcc-8004.3029.1	0.26	-0.0
2,959,282	-		Xcc-8004.3029.1	0.26	+1.1
2,959,282	-		Xcc-8004.3029.1	0.26	+0.4
2,959,282	-		Xcc-8004.3029.1	0.26	-0.5
2,959,282	-		Xcc-8004.3029.1	0.26	+0.5
2,959,287	+		Xcc-8004.3029.1	0.26	+1.3
2,959,287	+		Xcc-8004.3029.1	0.26	+0.9
2,959,288	-		Xcc-8004.3029.1	0.26	-1.5
2,959,288	-		Xcc-8004.3029.1	0.26	-0.5
2,959,288	-		Xcc-8004.3029.1	0.26	+0.3
2,959,288	-		Xcc-8004.3029.1	0.26	-1.2
2,959,323	+		Xcc-8004.3029.1	0.29	-2.5
2,959,323	+		Xcc-8004.3029.1	0.29	-0.8
2,959,323	+		Xcc-8004.3029.1	0.29	-1.0
2,959,323	+		Xcc-8004.3029.1	0.29	-0.3
2,959,323	+		Xcc-8004.3029.1	0.29	+0.2
2,959,323	+		Xcc-8004.3029.1	0.29	-1.7
2,959,324	-		Xcc-8004.3029.1	0.29	+1.5
2,959,324	-		Xcc-8004.3029.1	0.29	-0.6
2,959,324	-		Xcc-8004.3029.1	0.29	-1.1
2,959,324	-		Xcc-8004.3029.1	0.29	+0.8
2,959,324	-		Xcc-8004.3029.1	0.29	+0.7
2,959,324	-		Xcc-8004.3029.1	0.29	-1.0
2,959,324	-		Xcc-8004.3029.1	0.29	-0.8
2,959,324	-		Xcc-8004.3029.1	0.29	+0.5
2,959,324	-		Xcc-8004.3029.1	0.29	+0.1
2,959,332	+		Xcc-8004.3029.1	0.29	+0.7
2,959,332	+		Xcc-8004.3029.1	0.29	+1.2
2,959,333	-		Xcc-8004.3029.1	0.29	-0.3
2,959,333	-		Xcc-8004.3029.1	0.29	-0.1
2,959,333	-		Xcc-8004.3029.1	0.29	+0.1
2,959,427	+		Xcc-8004.3029.1	0.35	-1.6
2,959,427	+		Xcc-8004.3029.1	0.35	-0.7
2,959,427	+		Xcc-8004.3029.1	0.35	+0.3
2,959,427	+		Xcc-8004.3029.1	0.35	-1.2
2,959,427	+		Xcc-8004.3029.1	0.35	-1.5
2,959,427	+		Xcc-8004.3029.1	0.35	-1.4
2,959,427	+		Xcc-8004.3029.1	0.35	+1.9
2,959,427	+		Xcc-8004.3029.1	0.35	-1.0
2,959,428	-		Xcc-8004.3029.1	0.35	-0.7
2,959,428	-		Xcc-8004.3029.1	0.35	-1.0