Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2823.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,731,747	+				+2.2
2,731,747	+				-1.6
2,731,747	+				+2.3
2,731,747	+				+0.4
2,731,747	+				+1.2
2,731,748	-				-0.2
2,731,748	-				+0.6
2,731,748	-				-1.9
2,731,773	+				-2.1
2,731,773	+				+3.1
2,731,774	-				-0.1
2,732,010	+				+0.9
2,732,010	+				+0.4
2,732,010	+				+3.5
2,732,010	+				+1.3
2,732,010	+				-2.3
2,732,010	+				+2.3
2,732,010	+				-0.8
2,732,010	+				+3.6
2,732,010	+				-0.8
2,732,010	+				+2.1
2,732,010	+				+0.7
2,732,010	+				+1.7
2,732,010	+				+0.4
2,732,010	+				+3.1
2,732,010	+				+0.8
2,732,010	+				+2.3
2,732,010	+				+3.0
2,732,010	+				+0.5
2,732,010	+				+2.0
2,732,011	-				+0.6
2,732,011	-				-0.3
2,732,011	-				-0.2
2,732,011	-				+1.1
2,732,011	-				+0.2
2,732,011	-				-0.1
2,732,011	-				-0.8
2,732,011	-				-1.2
2,732,011	-				-0.3
2,732,011	-				+1.3
2,732,011	-				+1.5
2,732,011	-				+1.6
2,732,011	-				+0.3
2,732,011	-				+0.2
2,732,011	-				-0.5
2,732,011	-				+0.1
2,732,011	-				-1.2
2,732,011	-				+1.5
2,732,011	-				-0.0
2,732,011	-				+0.3
2,732,011	-				-0.0
2,732,011	-				-0.3
2,732,011	-				-1.5
2,732,011	-				+1.3
2,732,011	-				+0.5
2,732,011	-				+0.9
2,732,011	-				+1.3
2,732,011	-				+0.6
2,732,013	+				+0.5
2,732,013	+				+2.5
2,732,013	+				+1.2
2,732,013	+				+2.2
2,732,013	+				+0.3
2,732,014	-				+0.4
2,732,014	-				+0.3
2,732,014	-				-1.9
2,732,014	-				-1.3
2,732,014	-				+1.5
2,732,014	-				-2.7
2,732,014	-				+0.8
2,732,014	-				+0.5
2,732,044	+				+3.1
2,732,044	+				+1.4
2,732,044	+				+4.2
2,732,044	+				+2.2
2,732,044	+				+2.4
2,732,044	+				+2.6
2,732,044	+				+1.2
2,732,044	+				+4.0
2,732,044	+				+4.2
2,732,045	-				+1.1
2,732,045	-				+0.8
2,732,045	-				-2.2
2,732,045	-				+1.1
2,732,045	-				+1.9
2,732,045	-				-1.0
2,732,087	+				-0.6
2,732,087	+				+2.8
2,732,087	+				+1.1
2,732,087	+				+0.9
2,732,087	+				+2.2
2,732,088	-				-1.7
2,732,088	-				-2.3
2,732,088	-				-0.3
2,732,088	-				+1.3
2,732,127	+				+0.9
2,732,127	+				+3.8
2,732,127	+				+3.5
2,732,127	+				-0.4
2,732,128	-				-1.6
2,732,128	-				+0.9
2,733,069	+		Xcc-8004.2823.1	0.51	+3.6
2,733,069	+		Xcc-8004.2823.1	0.51	+2.9
2,733,069	+		Xcc-8004.2823.1	0.51	+1.2
2,733,069	+		Xcc-8004.2823.1	0.51	+1.6
2,733,069	+		Xcc-8004.2823.1	0.51	+1.5
2,733,069	+		Xcc-8004.2823.1	0.51	+0.3
2,733,069	+		Xcc-8004.2823.1	0.51	+3.7
2,733,069	+		Xcc-8004.2823.1	0.51	+2.3
2,733,069	+		Xcc-8004.2823.1	0.51	+3.1
2,733,069	+		Xcc-8004.2823.1	0.51	+4.3
2,733,069	+		Xcc-8004.2823.1	0.51	+1.0
2,733,069	+		Xcc-8004.2823.1	0.51	+4.3
2,733,069	+		Xcc-8004.2823.1	0.51	+2.7
2,733,069	+		Xcc-8004.2823.1	0.51	+1.5
2,733,069	+		Xcc-8004.2823.1	0.51	+0.2
2,733,069	+		Xcc-8004.2823.1	0.51	+2.4
2,733,069	+		Xcc-8004.2823.1	0.51	+1.0
2,733,069	+		Xcc-8004.2823.1	0.51	+3.3
2,733,069	+		Xcc-8004.2823.1	0.51	+5.0
2,733,069	+		Xcc-8004.2823.1	0.51	+0.8
2,733,070	-		Xcc-8004.2823.1	0.51	-0.4
2,733,070	-		Xcc-8004.2823.1	0.51	+0.2
2,733,070	-		Xcc-8004.2823.1	0.51	-1.4
2,733,070	-		Xcc-8004.2823.1	0.51	-0.5
2,733,070	-		Xcc-8004.2823.1	0.51	+0.3
2,733,070	-		Xcc-8004.2823.1	0.51	+1.5
2,733,070	-		Xcc-8004.2823.1	0.51	+1.0
2,733,070	-		Xcc-8004.2823.1	0.51	-1.3
2,733,070	-		Xcc-8004.2823.1	0.51	-2.7
2,733,070	-		Xcc-8004.2823.1	0.51	+0.3
2,733,070	-		Xcc-8004.2823.1	0.51	+0.9
2,733,070	-		Xcc-8004.2823.1	0.51	-1.1
2,733,141	+		Xcc-8004.2823.1	0.60	+1.8
2,733,141	+		Xcc-8004.2823.1	0.60	-0.5
2,733,141	+		Xcc-8004.2823.1	0.60	+2.0
2,733,141	+		Xcc-8004.2823.1	0.60	+1.9
2,733,141	+		Xcc-8004.2823.1	0.60	+1.0
2,733,141	+		Xcc-8004.2823.1	0.60	+3.9
2,733,141	+		Xcc-8004.2823.1	0.60	+0.8
2,733,141	+		Xcc-8004.2823.1	0.60	+2.9
2,733,141	+		Xcc-8004.2823.1	0.60	+0.7
2,733,141	+		Xcc-8004.2823.1	0.60	+1.0
2,733,141	+		Xcc-8004.2823.1	0.60	+2.7
2,733,141	+		Xcc-8004.2823.1	0.60	-0.7
2,733,141	+		Xcc-8004.2823.1	0.60	+1.3
2,733,141	+		Xcc-8004.2823.1	0.60	+0.4
2,733,141	+		Xcc-8004.2823.1	0.60	+3.3
2,733,141	+		Xcc-8004.2823.1	0.60	+3.4
2,733,141	+		Xcc-8004.2823.1	0.60	+1.2
2,733,141	+		Xcc-8004.2823.1	0.60	-0.4
2,733,141	+		Xcc-8004.2823.1	0.60	+3.1
2,733,141	+		Xcc-8004.2823.1	0.60	+1.2
2,733,141	+		Xcc-8004.2823.1	0.60	+2.0
2,733,141	+		Xcc-8004.2823.1	0.60	+1.4
2,733,142	-		Xcc-8004.2823.1	0.60	+0.2
2,733,142	-		Xcc-8004.2823.1	0.60	+1.9
2,733,142	-		Xcc-8004.2823.1	0.60	+1.6
2,733,142	-		Xcc-8004.2823.1	0.60	+0.2
2,733,142	-		Xcc-8004.2823.1	0.60	-0.8
2,733,142	-		Xcc-8004.2823.1	0.60	-0.6
2,733,142	-		Xcc-8004.2823.1	0.60	-0.8
2,733,142	-		Xcc-8004.2823.1	0.60	-2.8
2,733,142	-		Xcc-8004.2823.1	0.60	-0.3
2,733,142	-		Xcc-8004.2823.1	0.60	-0.1
2,733,142	-		Xcc-8004.2823.1	0.60	-0.3
2,733,142	-		Xcc-8004.2823.1	0.60	-3.2
2,733,142	-		Xcc-8004.2823.1	0.60	+0.6
2,733,142	-		Xcc-8004.2823.1	0.60	+0.9
2,733,453	+				+1.8
2,733,475	+				+2.6
2,733,475	+				+4.5
2,733,475	+				+3.4
2,733,475	+				+3.8
2,733,475	+				+3.7
2,733,475	+				+1.9
2,733,476	-				-2.2
2,733,476	-				-2.8
2,733,710	+				+1.0
2,733,710	+				-2.0
2,733,711	-				+1.2
2,733,711	-				-1.0
2,733,711	-				+1.0
2,733,711	-				-2.4
2,733,711	-				+1.2
2,733,863	+		Xcc-8004.2824.1	0.10	-0.7
2,733,863	+		Xcc-8004.2824.1	0.10	-1.8
2,733,864	-		Xcc-8004.2824.1	0.10	-2.5
2,733,864	-		Xcc-8004.2824.1	0.10	-2.9
2,733,864	-		Xcc-8004.2824.1	0.10	+1.5
2,733,864	-		Xcc-8004.2824.1	0.10	-2.4
2,733,864	-		Xcc-8004.2824.1	0.10	+0.6
2,733,865	+		Xcc-8004.2824.1	0.10	+0.7
2,733,865	+		Xcc-8004.2824.1	0.10	+0.2
2,733,865	+		Xcc-8004.2824.1	0.10	+1.1
2,733,865	+		Xcc-8004.2824.1	0.10	-0.5
2,733,866	-		Xcc-8004.2824.1	0.10	+0.2
2,733,866	-		Xcc-8004.2824.1	0.10	-0.1
2,733,866	-		Xcc-8004.2824.1	0.10	-0.2
2,733,866	-		Xcc-8004.2824.1	0.10	+0.2
2,733,866	-		Xcc-8004.2824.1	0.10	+0.9
2,733,866	-		Xcc-8004.2824.1	0.10	-0.8
2,733,962	+		Xcc-8004.2824.1	0.13	-0.5
2,733,962	+		Xcc-8004.2824.1	0.13	+0.4
2,733,962	+		Xcc-8004.2824.1	0.13	-1.2
2,733,962	+		Xcc-8004.2824.1	0.13	-1.8
2,733,962	+		Xcc-8004.2824.1	0.13	-0.0
2,733,962	+		Xcc-8004.2824.1	0.13	+1.4
2,733,962	+		Xcc-8004.2824.1	0.13	-1.7
2,733,962	+		Xcc-8004.2824.1	0.13	-0.7
2,733,962	+		Xcc-8004.2824.1	0.13	-1.7
2,733,962	+		Xcc-8004.2824.1	0.13	-0.4
2,733,962	+		Xcc-8004.2824.1	0.13	+0.1
2,733,962	+		Xcc-8004.2824.1	0.13	-0.7
2,733,962	+		Xcc-8004.2824.1	0.13	-0.0
2,733,962	+		Xcc-8004.2824.1	0.13	-1.3
2,733,962	+		Xcc-8004.2824.1	0.13	+1.3
2,733,962	+		Xcc-8004.2824.1	0.13	+0.4
2,733,962	+		Xcc-8004.2824.1	0.13	+0.2
2,733,963	-		Xcc-8004.2824.1	0.13	+1.8
2,733,963	-		Xcc-8004.2824.1	0.13	-1.5
2,733,963	-		Xcc-8004.2824.1	0.13	-1.6
2,733,963	-		Xcc-8004.2824.1	0.13	+0.3
2,733,963	-		Xcc-8004.2824.1	0.13	-2.0
2,733,963	-		Xcc-8004.2824.1	0.13	+1.8
2,733,963	-		Xcc-8004.2824.1	0.13	-1.0
2,733,963	-		Xcc-8004.2824.1	0.13	-0.4
2,733,963	-		Xcc-8004.2824.1	0.13	+0.1
2,733,963	-		Xcc-8004.2824.1	0.13	-1.0
2,733,963	-		Xcc-8004.2824.1	0.13	-0.5
2,733,963	-		Xcc-8004.2824.1	0.13	-2.0
2,733,963	-		Xcc-8004.2824.1	0.13	-0.8
2,733,963	-		Xcc-8004.2824.1	0.13	+1.2
2,733,963	-		Xcc-8004.2824.1	0.13	+0.7
2,733,963	-		Xcc-8004.2824.1	0.13	+1.0
2,733,963	-		Xcc-8004.2824.1	0.13	+1.5
2,733,963	-		Xcc-8004.2824.1	0.13	-0.2
2,733,963	-		Xcc-8004.2824.1	0.13	-0.2
2,733,963	-		Xcc-8004.2824.1	0.13	-1.8
2,733,963	-		Xcc-8004.2824.1	0.13	-2.5