Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2772.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,687,604	-		Xcc-8004.2768.1	0.61	+2.1
2,687,788	+		Xcc-8004.2768.1	0.72	+2.2
2,687,789	-		Xcc-8004.2768.1	0.72	+0.2
2,687,789	-		Xcc-8004.2768.1	0.72	+0.9
2,687,789	-		Xcc-8004.2768.1	0.72	+5.1
2,687,789	-		Xcc-8004.2768.1	0.72	+2.8
2,687,845	+		Xcc-8004.2768.1	0.75	-1.3
2,687,886	+		Xcc-8004.2768.1	0.78	+3.1
2,687,886	+		Xcc-8004.2768.1	0.78	+1.1
2,687,887	-		Xcc-8004.2768.1	0.78	+1.3
2,687,887	-		Xcc-8004.2768.1	0.78	+2.4
2,687,887	-		Xcc-8004.2768.1	0.78	-0.6
2,687,887	-		Xcc-8004.2768.1	0.78	+1.6
2,687,939	+		Xcc-8004.2768.1	0.81	-1.7
2,687,940	-		Xcc-8004.2768.1	0.81	+1.8
2,688,091	+		Xcc-8004.2768.1	0.90	+0.0
2,688,092	-		Xcc-8004.2768.1	0.90	+2.4
2,688,125	-				+1.1
2,688,125	-				+2.1
2,688,172	+				+1.5
2,688,172	+				-1.6
2,688,172	+				-0.3
2,688,172	+				+0.9
2,688,173	-				+2.3
2,688,173	-				+3.3
2,688,173	-				+1.4
2,688,173	-				-0.3
2,688,293	+				-1.1
2,688,294	-				-2.8
2,688,294	-				-1.5
2,688,370	+				-0.5
2,688,422	-				+0.6
2,688,520	+				-0.1
2,688,730	+		Xcc-8004.2772.1	0.25	+2.8
2,688,730	+		Xcc-8004.2772.1	0.25	+2.1
2,688,730	+		Xcc-8004.2772.1	0.25	-0.7
2,688,730	+		Xcc-8004.2772.1	0.25	+2.9
2,688,781	+		Xcc-8004.2772.1	0.29	-0.1
2,688,781	+		Xcc-8004.2772.1	0.29	+1.1
2,688,781	+		Xcc-8004.2772.1	0.29	+2.2
2,688,782	-		Xcc-8004.2772.1	0.30	+1.5
2,688,782	-		Xcc-8004.2772.1	0.30	-0.5
2,688,805	+		Xcc-8004.2772.1	0.31	+0.2
2,688,805	+		Xcc-8004.2772.1	0.31	+0.4
2,688,893	-		Xcc-8004.2772.1	0.39	+0.9
2,689,066	+		Xcc-8004.2772.1	0.53	+0.8
2,689,066	+		Xcc-8004.2772.1	0.53	+3.2
2,689,066	+		Xcc-8004.2772.1	0.53	+1.6
2,689,067	-		Xcc-8004.2772.1	0.53	+3.3
2,689,067	-		Xcc-8004.2772.1	0.53	+2.2
2,689,099	+		Xcc-8004.2772.1	0.55	+4.2
2,689,099	+		Xcc-8004.2772.1	0.55	+0.4
2,689,100	-		Xcc-8004.2772.1	0.55	+1.1
2,689,100	-		Xcc-8004.2772.1	0.55	-0.4
2,689,132	+		Xcc-8004.2772.1	0.58	+0.1
2,689,132	+		Xcc-8004.2772.1	0.58	-1.0
2,689,132	+		Xcc-8004.2772.1	0.58	+0.2
2,689,133	-		Xcc-8004.2772.1	0.58	-1.1
2,689,133	-		Xcc-8004.2772.1	0.58	+0.7
2,689,133	-		Xcc-8004.2772.1	0.58	+2.9
2,689,133	-		Xcc-8004.2772.1	0.58	+0.9
2,689,133	-		Xcc-8004.2772.1	0.58	+1.8
2,689,240	+		Xcc-8004.2772.1	0.67	+3.5
2,689,240	+		Xcc-8004.2772.1	0.67	+1.5
2,689,240	+		Xcc-8004.2772.1	0.67	-0.5
2,689,240	+		Xcc-8004.2772.1	0.67	-0.5
2,689,240	+		Xcc-8004.2772.1	0.67	+1.2
2,689,241	-		Xcc-8004.2772.1	0.67	-0.0
2,689,241	-		Xcc-8004.2772.1	0.67	+2.7
2,689,241	-		Xcc-8004.2772.1	0.67	+2.2
2,689,241	-		Xcc-8004.2772.1	0.67	+1.0
2,689,286	-		Xcc-8004.2772.1	0.71	+0.5
2,689,286	-		Xcc-8004.2772.1	0.71	+2.1
2,689,286	-		Xcc-8004.2772.1	0.71	+1.7
2,689,286	-		Xcc-8004.2772.1	0.71	-0.9
2,689,351	+		Xcc-8004.2772.1	0.76	+0.2
2,689,351	+		Xcc-8004.2772.1	0.76	+0.8
2,689,351	+		Xcc-8004.2772.1	0.76	+0.8
2,689,351	+		Xcc-8004.2772.1	0.76	+0.8
2,689,352	-		Xcc-8004.2772.1	0.76	+3.8
2,689,352	-		Xcc-8004.2772.1	0.76	+1.0
2,689,352	-		Xcc-8004.2772.1	0.76	+1.3
2,689,354	+		Xcc-8004.2772.1	0.76	+2.8
2,689,354	+		Xcc-8004.2772.1	0.76	+2.9
2,689,354	+		Xcc-8004.2772.1	0.76	+0.3
2,689,354	+		Xcc-8004.2772.1	0.76	-2.1
2,689,354	+		Xcc-8004.2772.1	0.76	+1.2
2,689,354	+		Xcc-8004.2772.1	0.76	-0.7
2,689,354	+		Xcc-8004.2772.1	0.76	+0.8
2,689,355	-		Xcc-8004.2772.1	0.76	+2.0
2,689,355	-		Xcc-8004.2772.1	0.76	+1.3
2,689,355	-		Xcc-8004.2772.1	0.76	+0.7
2,689,355	-		Xcc-8004.2772.1	0.76	-0.1
2,689,355	-		Xcc-8004.2772.1	0.76	-1.2
2,689,415	+		Xcc-8004.2772.1	0.81	-1.5
2,689,416	-		Xcc-8004.2772.1	0.81	+0.2
2,689,416	-		Xcc-8004.2772.1	0.81	+0.3
2,689,416	-		Xcc-8004.2772.1	0.81	+1.7
2,689,661	+				+0.3
2,689,661	+				-0.7
2,689,661	+				+1.6
2,689,662	-				+2.2
2,689,662	-				+1.3
2,689,662	-				-0.4
2,689,676	+				-2.1
2,689,676	+				+1.4
2,689,676	+				+1.0
2,689,677	-				+0.3
2,689,677	-				-0.1
2,689,677	-				-0.8
2,689,677	-				+0.2
2,689,677	-				-0.2
2,689,677	-				+0.8
2,689,677	-				+1.2
2,689,677	-				-2.1
2,689,678	+				-1.4
2,689,678	+				+0.1
2,689,678	+				-0.9
2,689,678	+				+1.4
2,689,678	+				-1.7
2,689,678	+				-0.9
2,689,678	+				+0.3
2,689,679	-				-2.5
2,689,679	-				+0.6
2,689,679	-				+1.0
2,689,679	-				-1.5
2,689,679	-				-0.3
2,689,679	-				-1.3
2,689,757	+		Xcc-8004.2773.1	0.10	-1.6
2,689,757	+		Xcc-8004.2773.1	0.10	+1.5
2,689,757	+		Xcc-8004.2773.1	0.10	+1.5
2,689,757	+		Xcc-8004.2773.1	0.10	+2.0
2,689,757	+		Xcc-8004.2773.1	0.10	+0.5
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	-0.5
2,689,757	+		Xcc-8004.2773.1	0.10	-0.0
2,689,757	+		Xcc-8004.2773.1	0.10	+0.0
2,689,757	+		Xcc-8004.2773.1	0.10	-1.2
2,689,758	-		Xcc-8004.2773.1	0.10	+0.0
2,689,758	-		Xcc-8004.2773.1	0.10	-2.3
2,689,758	-		Xcc-8004.2773.1	0.10	-1.9
2,689,758	-		Xcc-8004.2773.1	0.10	-0.1
2,689,758	-		Xcc-8004.2773.1	0.10	-0.2
2,689,758	-		Xcc-8004.2773.1	0.10	-0.7
2,689,782	+		Xcc-8004.2773.1	0.18	+1.6
2,689,782	+		Xcc-8004.2773.1	0.18	+0.6
2,689,782	+		Xcc-8004.2773.1	0.18	-0.7
2,689,783	-		Xcc-8004.2773.1	0.18	-0.0
2,689,783	-		Xcc-8004.2773.1	0.18	+2.1
2,690,072	+				-1.4
2,690,072	+				-1.2
2,690,073	-				-1.6
2,690,398	-				+2.0
2,690,398	-				+0.9
2,690,407	-				+1.2
2,690,407	-				-0.8
2,690,438	-				+1.5
2,690,439	+				-1.5
2,690,439	+				+0.6
2,690,440	-				+0.9
2,690,440	-				+1.1
2,690,450	+				+0.5
2,690,450	+				-1.9
2,690,626	+		Xcc-8004.2776.1	0.27	-1.2