Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2768.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,685,574	+		Xcc-8004.2767.1	0.54	-0.5
2,685,574	+		Xcc-8004.2767.1	0.54	-1.4
2,685,574	+		Xcc-8004.2767.1	0.54	-0.8
2,685,574	+		Xcc-8004.2767.1	0.54	+1.4
2,685,574	+		Xcc-8004.2767.1	0.54	-0.8
2,685,574	+		Xcc-8004.2767.1	0.54	+0.3
2,685,574	+		Xcc-8004.2767.1	0.54	-0.4
2,685,574	+		Xcc-8004.2767.1	0.54	-2.2
2,685,575	-		Xcc-8004.2767.1	0.54	+0.1
2,685,575	-		Xcc-8004.2767.1	0.54	+2.6
2,685,575	-		Xcc-8004.2767.1	0.54	+0.8
2,685,575	-		Xcc-8004.2767.1	0.54	-1.7
2,685,575	-		Xcc-8004.2767.1	0.54	+0.5
2,685,575	-		Xcc-8004.2767.1	0.54	-0.7
2,685,575	-		Xcc-8004.2767.1	0.54	-0.9
2,685,575	-		Xcc-8004.2767.1	0.54	+0.7
2,685,682	+		Xcc-8004.2767.1	0.59	-0.2
2,685,682	+		Xcc-8004.2767.1	0.59	+0.2
2,685,682	+		Xcc-8004.2767.1	0.59	-0.7
2,685,683	-		Xcc-8004.2767.1	0.59	+0.5
2,685,683	-		Xcc-8004.2767.1	0.59	+0.9
2,685,683	-		Xcc-8004.2767.1	0.59	-0.4
2,685,760	+		Xcc-8004.2767.1	0.62	+0.3
2,685,761	-		Xcc-8004.2767.1	0.63	+1.2
2,685,791	-		Xcc-8004.2767.1	0.64	-1.3
2,685,986	+		Xcc-8004.2767.1	0.73	-0.9
2,685,987	-		Xcc-8004.2767.1	0.73	+0.1
2,685,987	-		Xcc-8004.2767.1	0.73	+0.9
2,686,082	+		Xcc-8004.2767.1	0.78	-0.9
2,686,082	+		Xcc-8004.2767.1	0.78	+1.1
2,686,082	+		Xcc-8004.2767.1	0.78	-3.2
2,686,082	+		Xcc-8004.2767.1	0.78	+0.5
2,686,082	+		Xcc-8004.2767.1	0.78	+0.0
2,686,082	+		Xcc-8004.2767.1	0.78	-0.0
2,686,082	+		Xcc-8004.2767.1	0.78	+0.6
2,686,083	-		Xcc-8004.2767.1	0.78	-0.6
2,686,083	-		Xcc-8004.2767.1	0.78	-1.9
2,686,083	-		Xcc-8004.2767.1	0.78	+1.3
2,686,083	-		Xcc-8004.2767.1	0.78	+0.3
2,686,083	-		Xcc-8004.2767.1	0.78	+0.6
2,686,201	-		Xcc-8004.2767.1	0.84	-1.3
2,686,255	-		Xcc-8004.2767.1	0.86	-0.4
2,686,455	-				-2.7
2,686,455	-				-0.8
2,686,502	-				-0.6
2,686,502	-				+2.4
2,686,622	+				-1.9
2,686,622	+				+0.9
2,686,622	+				+2.4
2,686,622	+				+4.3
2,686,622	+				-1.9
2,686,622	+				-0.6
2,686,623	-				+1.8
2,686,623	-				+0.7
2,686,623	-				+1.3
2,686,623	-				-2.9
2,686,678	-				+1.4
2,686,915	+		Xcc-8004.2768.1	0.21	-1.0
2,686,915	+		Xcc-8004.2768.1	0.21	+1.8
2,686,916	-		Xcc-8004.2768.1	0.21	-2.1
2,686,923	-		Xcc-8004.2768.1	0.22	+0.3
2,686,993	+		Xcc-8004.2768.1	0.26	+0.2
2,686,994	-		Xcc-8004.2768.1	0.26	+1.2
2,687,037	+		Xcc-8004.2768.1	0.28	+2.6
2,687,037	+		Xcc-8004.2768.1	0.28	+1.4
2,687,037	+		Xcc-8004.2768.1	0.28	+0.6
2,687,037	+		Xcc-8004.2768.1	0.28	+0.6
2,687,038	-		Xcc-8004.2768.1	0.28	+0.3
2,687,050	+		Xcc-8004.2768.1	0.29	+0.4
2,687,050	+		Xcc-8004.2768.1	0.29	+1.7
2,687,050	+		Xcc-8004.2768.1	0.29	-0.8
2,687,050	+		Xcc-8004.2768.1	0.29	+3.1
2,687,051	-		Xcc-8004.2768.1	0.29	+1.1
2,687,051	-		Xcc-8004.2768.1	0.29	+0.4
2,687,051	-		Xcc-8004.2768.1	0.29	+1.3
2,687,051	-		Xcc-8004.2768.1	0.29	+3.0
2,687,051	-		Xcc-8004.2768.1	0.29	+1.2
2,687,604	-		Xcc-8004.2768.1	0.61	+2.1
2,687,788	+		Xcc-8004.2768.1	0.72	+2.2
2,687,789	-		Xcc-8004.2768.1	0.72	+0.2
2,687,789	-		Xcc-8004.2768.1	0.72	+0.9
2,687,789	-		Xcc-8004.2768.1	0.72	+5.1
2,687,789	-		Xcc-8004.2768.1	0.72	+2.8
2,687,845	+		Xcc-8004.2768.1	0.75	-1.3
2,687,886	+		Xcc-8004.2768.1	0.78	+3.1
2,687,886	+		Xcc-8004.2768.1	0.78	+1.1
2,687,887	-		Xcc-8004.2768.1	0.78	+1.3
2,687,887	-		Xcc-8004.2768.1	0.78	+2.4
2,687,887	-		Xcc-8004.2768.1	0.78	-0.6
2,687,887	-		Xcc-8004.2768.1	0.78	+1.6
2,687,939	+		Xcc-8004.2768.1	0.81	-1.7
2,687,940	-		Xcc-8004.2768.1	0.81	+1.8
2,688,091	+		Xcc-8004.2768.1	0.90	+0.0
2,688,092	-		Xcc-8004.2768.1	0.90	+2.4
2,688,125	-				+1.1
2,688,125	-				+2.1
2,688,172	+				+1.5
2,688,172	+				-1.6
2,688,172	+				-0.3
2,688,172	+				+0.9
2,688,173	-				+2.3
2,688,173	-				+3.3
2,688,173	-				+1.4
2,688,173	-				-0.3
2,688,293	+				-1.1
2,688,294	-				-2.8
2,688,294	-				-1.5
2,688,370	+				-0.5
2,688,422	-				+0.6
2,688,520	+				-0.1
2,688,730	+		Xcc-8004.2772.1	0.25	+2.8
2,688,730	+		Xcc-8004.2772.1	0.25	+2.1
2,688,730	+		Xcc-8004.2772.1	0.25	-0.7
2,688,730	+		Xcc-8004.2772.1	0.25	+2.9
2,688,781	+		Xcc-8004.2772.1	0.29	-0.1
2,688,781	+		Xcc-8004.2772.1	0.29	+1.1
2,688,781	+		Xcc-8004.2772.1	0.29	+2.2
2,688,782	-		Xcc-8004.2772.1	0.30	+1.5
2,688,782	-		Xcc-8004.2772.1	0.30	-0.5
2,688,805	+		Xcc-8004.2772.1	0.31	+0.2
2,688,805	+		Xcc-8004.2772.1	0.31	+0.4
2,688,893	-		Xcc-8004.2772.1	0.39	+0.9
2,689,066	+		Xcc-8004.2772.1	0.53	+0.8
2,689,066	+		Xcc-8004.2772.1	0.53	+3.2
2,689,066	+		Xcc-8004.2772.1	0.53	+1.6
2,689,067	-		Xcc-8004.2772.1	0.53	+3.3
2,689,067	-		Xcc-8004.2772.1	0.53	+2.2
2,689,099	+		Xcc-8004.2772.1	0.55	+4.2
2,689,099	+		Xcc-8004.2772.1	0.55	+0.4
2,689,100	-		Xcc-8004.2772.1	0.55	+1.1
2,689,100	-		Xcc-8004.2772.1	0.55	-0.4
2,689,132	+		Xcc-8004.2772.1	0.58	+0.1
2,689,132	+		Xcc-8004.2772.1	0.58	-1.0
2,689,132	+		Xcc-8004.2772.1	0.58	+0.2
2,689,133	-		Xcc-8004.2772.1	0.58	-1.1
2,689,133	-		Xcc-8004.2772.1	0.58	+0.7
2,689,133	-		Xcc-8004.2772.1	0.58	+2.9
2,689,133	-		Xcc-8004.2772.1	0.58	+0.9
2,689,133	-		Xcc-8004.2772.1	0.58	+1.8
2,689,240	+		Xcc-8004.2772.1	0.67	+3.5
2,689,240	+		Xcc-8004.2772.1	0.67	+1.5
2,689,240	+		Xcc-8004.2772.1	0.67	-0.5
2,689,240	+		Xcc-8004.2772.1	0.67	-0.5
2,689,240	+		Xcc-8004.2772.1	0.67	+1.2
2,689,241	-		Xcc-8004.2772.1	0.67	-0.0
2,689,241	-		Xcc-8004.2772.1	0.67	+2.7
2,689,241	-		Xcc-8004.2772.1	0.67	+2.2
2,689,241	-		Xcc-8004.2772.1	0.67	+1.0