Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2563.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,472,875	+		Xcc-8004.2562.1	0.65	+1.8
2,472,875	+		Xcc-8004.2562.1	0.65	+0.3
2,472,875	+		Xcc-8004.2562.1	0.65	-0.3
2,472,875	+		Xcc-8004.2562.1	0.65	-2.4
2,472,875	+		Xcc-8004.2562.1	0.65	+0.4
2,472,875	+		Xcc-8004.2562.1	0.65	+0.7
2,472,875	+		Xcc-8004.2562.1	0.65	+1.8
2,472,875	+		Xcc-8004.2562.1	0.65	+0.2
2,472,876	-		Xcc-8004.2562.1	0.65	+2.5
2,472,876	-		Xcc-8004.2562.1	0.65	+0.4
2,472,876	-		Xcc-8004.2562.1	0.65	+0.5
2,472,876	-		Xcc-8004.2562.1	0.65	-1.0
2,472,876	-		Xcc-8004.2562.1	0.65	+3.8
2,472,876	-		Xcc-8004.2562.1	0.65	-1.3
2,472,876	-		Xcc-8004.2562.1	0.65	-1.4
2,473,001	+		Xcc-8004.2562.1	0.70	-0.3
2,473,001	+		Xcc-8004.2562.1	0.70	-0.3
2,473,001	+		Xcc-8004.2562.1	0.70	-0.0
2,473,001	+		Xcc-8004.2562.1	0.70	-0.5
2,473,002	-		Xcc-8004.2562.1	0.71	-2.5
2,473,002	-		Xcc-8004.2562.1	0.71	-0.5
2,473,005	+		Xcc-8004.2562.1	0.71	-0.1
2,473,005	+		Xcc-8004.2562.1	0.71	+0.0
2,473,005	+		Xcc-8004.2562.1	0.71	+0.0
2,473,006	-		Xcc-8004.2562.1	0.71	-0.6
2,473,006	-		Xcc-8004.2562.1	0.71	-0.7
2,473,006	-		Xcc-8004.2562.1	0.71	+1.0
2,473,006	-		Xcc-8004.2562.1	0.71	-0.3
2,473,006	-		Xcc-8004.2562.1	0.71	-0.6
2,473,006	-		Xcc-8004.2562.1	0.71	-0.2
2,473,006	-		Xcc-8004.2562.1	0.71	+1.0
2,473,006	-		Xcc-8004.2562.1	0.71	-0.9
2,473,034	+		Xcc-8004.2562.1	0.72	+0.2
2,473,034	+		Xcc-8004.2562.1	0.72	-1.4
2,473,035	-		Xcc-8004.2562.1	0.72	-1.9
2,473,035	-		Xcc-8004.2562.1	0.72	+0.3
2,473,035	-		Xcc-8004.2562.1	0.72	-2.6
2,473,035	-		Xcc-8004.2562.1	0.72	+0.4
2,473,035	-		Xcc-8004.2562.1	0.72	-0.5
2,473,133	+		Xcc-8004.2562.1	0.77	-0.8
2,473,133	+		Xcc-8004.2562.1	0.77	-1.4
2,473,134	-		Xcc-8004.2562.1	0.77	+2.5
2,473,134	-		Xcc-8004.2562.1	0.77	-3.1
2,473,294	-		Xcc-8004.2562.1	0.84	-0.9
2,473,294	-		Xcc-8004.2562.1	0.84	-0.8
2,473,301	+		Xcc-8004.2562.1	0.85	-1.3
2,473,302	-		Xcc-8004.2562.1	0.85	-1.3
2,473,302	-		Xcc-8004.2562.1	0.85	-0.2
2,473,302	-		Xcc-8004.2562.1	0.85	+1.7
2,473,302	-		Xcc-8004.2562.1	0.85	-0.2
2,473,411	-		Xcc-8004.2562.1	0.90	+0.1
2,473,461	+				+0.6
2,473,462	-				+1.5
2,473,462	-				+1.1
2,473,462	-				+2.1
2,473,507	+				-1.2
2,473,507	+				-0.2
2,473,507	+				+0.9
2,473,507	+				+1.4
2,473,507	+				-0.3
2,473,507	+				-2.0
2,473,507	+				+0.1
2,473,507	+				-2.8
2,473,507	+				-0.2
2,473,507	+				-1.2
2,473,507	+				-0.0
2,473,507	+				-0.1
2,473,507	+				+2.0
2,473,507	+				-2.0
2,473,508	-				+3.0
2,473,508	-				-0.2
2,473,508	-				+0.5
2,473,508	-				+1.7
2,473,508	-				+0.7
2,473,508	-				+0.2
2,473,508	-				-0.3
2,473,508	-				+0.5
2,473,508	-				-1.0
2,473,508	-				+0.9
2,473,508	-				+0.2
2,473,508	-				+0.5
2,473,508	-				+0.1
2,473,537	+				+0.8
2,473,537	+				-0.7
2,473,538	-				-0.9
2,473,553	+				-0.2
2,473,554	-				+0.5
2,473,554	-				-0.4
2,473,707	+				-0.1
2,473,707	+				+1.0
2,473,707	+				+0.1
2,473,708	-				+1.4
2,473,708	-				-2.1
2,473,751	+				-0.9
2,473,751	+				+0.7
2,473,751	+				-0.3
2,473,751	+				-0.2
2,473,751	+				+0.2
2,473,752	-				+0.9
2,473,752	-				+0.8
2,473,752	-				-0.2
2,473,754	+				-1.2
2,473,754	+				+1.0
2,473,754	+				-0.9
2,473,755	-				-0.1
2,473,755	-				+0.1
2,473,765	+				-2.6
2,473,766	-				-1.3
2,473,793	+				-0.9
2,473,846	+				-0.4
2,473,846	+				+0.0
2,473,846	+				+1.8
2,473,847	-				-0.8
2,473,852	+				+1.6
2,473,852	+				-1.0
2,473,853	-				+0.7
2,473,853	-				-0.5
2,473,853	-				-1.0
2,473,853	-				-0.7
2,473,853	-				-0.3
2,473,853	-				-1.5
2,473,881	+				-0.4
2,473,881	+				-0.3
2,473,881	+				-0.6
2,473,881	+				-0.5
2,473,882	-				-1.4
2,473,882	-				+0.1
2,473,882	-				-1.0
2,473,882	-				+1.8
2,473,882	-				-0.8
2,473,882	-				+0.3
2,473,882	-				-0.0
2,473,882	-				-1.2
2,473,882	-				-0.9
2,473,995	+		Xcc-8004.2563.1	0.32	+0.1
2,473,995	+		Xcc-8004.2563.1	0.32	+1.6
2,473,995	+		Xcc-8004.2563.1	0.32	+1.6
2,473,995	+		Xcc-8004.2563.1	0.32	-0.4
2,474,274	+				+0.5
2,474,274	+				+1.6
2,474,274	+				-0.8
2,474,275	-				+1.8
2,474,275	-				-0.9
2,474,275	-				+0.0
2,474,340	+		Xcc-8004.2564.1	0.27	+0.1
2,474,340	+		Xcc-8004.2564.1	0.27	+0.9
2,474,341	-		Xcc-8004.2564.1	0.28	-1.2
2,474,341	-		Xcc-8004.2564.1	0.28	+0.4
2,474,352	+		Xcc-8004.2564.1	0.33	-0.2
2,474,352	+		Xcc-8004.2564.1	0.33	+0.6
2,474,386	+		Xcc-8004.2564.1	0.49	-0.0
2,474,386	+		Xcc-8004.2564.1	0.49	+2.5
2,474,403	+		Xcc-8004.2564.1	0.57	+3.2
2,474,403	+		Xcc-8004.2564.1	0.57	+0.8
2,474,403	+		Xcc-8004.2564.1	0.57	+0.5
2,474,403	+		Xcc-8004.2564.1	0.57	-0.4
2,474,404	-		Xcc-8004.2564.1	0.57	+2.1
2,474,404	-		Xcc-8004.2564.1	0.57	-0.4
2,474,404	-		Xcc-8004.2564.1	0.57	+0.5
2,474,404	-		Xcc-8004.2564.1	0.57	-0.7
2,474,404	-		Xcc-8004.2564.1	0.57	-1.3
2,474,404	-		Xcc-8004.2564.1	0.57	+1.6
2,474,404	-		Xcc-8004.2564.1	0.57	-0.6
2,474,441	+		Xcc-8004.2564.1	0.75	-0.3
2,474,442	-		Xcc-8004.2564.1	0.75	+0.1
2,474,454	+		Xcc-8004.2564.1	0.81	-1.0
2,474,455	-		Xcc-8004.2564.1	0.81	-2.2
2,474,455	-		Xcc-8004.2564.1	0.81	-1.0
2,474,455	-		Xcc-8004.2564.1	0.81	+0.1
2,474,455	-		Xcc-8004.2564.1	0.81	-0.2
2,474,455	-		Xcc-8004.2564.1	0.81	-0.3
2,474,455	-		Xcc-8004.2564.1	0.81	+0.1
2,474,498	+		Xcc-8004.2565.1	0.17	-1.3
2,474,498	+		Xcc-8004.2565.1	0.17	-0.4
2,474,499	-		Xcc-8004.2565.1	0.18	+2.1
2,474,499	-		Xcc-8004.2565.1	0.18	-1.6
2,474,499	-		Xcc-8004.2565.1	0.18	+1.8
2,474,506	+		Xcc-8004.2565.1	0.21	-1.3
2,475,067	+				+1.7
2,475,068	-				-0.4
2,475,068	-				+0.5
2,475,115	+				-1.2
2,475,115	+				+0.5
2,475,116	-				-0.3
2,475,116	-				-0.3
2,475,215	-		Xcc-8004.2567.1	0.16	-0.5