Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2475.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2473.1 and Xcc-8004.2474.1 are separated by 44 nucleotidesXcc-8004.2474.1 and Xcc-8004.2475.1 overlap by 4 nucleotidesXcc-8004.2475.1 and Xcc-8004.2476.1 are separated by 89 nucleotides Xcc-8004.2473.1: Xcc-8004.2473.1 - Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130), at 2,407,701 to 2,408,756 Xcc-8004.2473.1 Xcc-8004.2474.1: Xcc-8004.2474.1 - 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38), at 2,408,801 to 2,409,646 Xcc-8004.2474.1 Xcc-8004.2475.1: Xcc-8004.2475.1 - Low molecular weight protein tyrosine phosphatase (EC 3.1.3.48), at 2,409,643 to 2,410,107 Xcc-8004.2475.1 Xcc-8004.2476.1: Xcc-8004.2476.1 - Alr1013 protein, at 2,410,197 to 2,411,549 Xcc-8004.2476.1 Position (kb) 2409 2410 2411Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2408.731 kb on + strandat 2408.731 kb on + strandat 2408.731 kb on + strandat 2408.732 kb on - strandat 2408.732 kb on - strandat 2408.732 kb on - strandat 2408.789 kb on - strandat 2408.789 kb on - strandat 2408.789 kb on - strandat 2408.789 kb on - strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.672 kb on + strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2409.673 kb on - strandat 2410.018 kb on + strand, within Xcc-8004.2475.1at 2410.018 kb on + strand, within Xcc-8004.2475.1at 2410.019 kb on - strand, within Xcc-8004.2475.1at 2410.019 kb on - strand, within Xcc-8004.2475.1at 2410.019 kb on - strand, within Xcc-8004.2475.1at 2410.019 kb on - strand, within Xcc-8004.2475.1at 2410.121 kb on + strandat 2410.121 kb on + strandat 2410.121 kb on + strandat 2410.121 kb on + strandat 2410.121 kb on + strandat 2410.122 kb on - strandat 2410.122 kb on - strandat 2410.122 kb on - strandat 2410.122 kb on - strandat 2410.485 kb on + strand, within Xcc-8004.2476.1at 2410.485 kb on + strand, within Xcc-8004.2476.1at 2410.485 kb on + strand, within Xcc-8004.2476.1at 2410.485 kb on + strand, within Xcc-8004.2476.1at 2410.485 kb on + strand, within Xcc-8004.2476.1at 2410.486 kb on - strand, within Xcc-8004.2476.1at 2410.486 kb on - strand, within Xcc-8004.2476.1at 2410.486 kb on - strand, within Xcc-8004.2476.1at 2410.486 kb on - strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.668 kb on + strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.669 kb on - strand, within Xcc-8004.2476.1at 2410.671 kb on - strand, within Xcc-8004.2476.1at 2410.671 kb on - strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.827 kb on + strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.828 kb on - strand, within Xcc-8004.2476.1at 2410.839 kb on - strand, within Xcc-8004.2476.1at 2410.965 kb on + strand, within Xcc-8004.2476.1at 2410.965 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.037 kb on + strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1at 2411.038 kb on - strand, within Xcc-8004.2476.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,408,731 + -0.5
2,408,731 + +0.8
2,408,731 + -1.7
2,408,732 - +0.5
2,408,732 - -0.0
2,408,732 - -0.8
2,408,789 - -0.6
2,408,789 - -1.3
2,408,789 - -1.0
2,408,789 - -0.8
2,409,672 + -0.8
2,409,672 + +1.8
2,409,672 + -0.1
2,409,672 + -0.3
2,409,672 + -0.3
2,409,672 + +0.9
2,409,672 + +1.3
2,409,672 + +0.3
2,409,672 + +0.7
2,409,672 + +1.7
2,409,672 + -1.1
2,409,672 + +0.6
2,409,672 + +0.7
2,409,673 - +1.3
2,409,673 - -0.1
2,409,673 - +2.5
2,409,673 - +0.5
2,409,673 - -2.8
2,409,673 - +0.5
2,409,673 - +0.5
2,409,673 - +0.8
2,409,673 - -0.5
2,409,673 - -3.0
2,410,018 + Xcc-8004.2475.1 0.81 +0.4
2,410,018 + Xcc-8004.2475.1 0.81 +3.5
2,410,019 - Xcc-8004.2475.1 0.81 -0.7
2,410,019 - Xcc-8004.2475.1 0.81 +0.5
2,410,019 - Xcc-8004.2475.1 0.81 -1.0
2,410,019 - Xcc-8004.2475.1 0.81 +0.1
2,410,121 + +0.2
2,410,121 + +1.5
2,410,121 + -0.3
2,410,121 + +1.8
2,410,121 + -0.8
2,410,122 - +0.7
2,410,122 - +0.7
2,410,122 - -0.5
2,410,122 - +1.6
2,410,485 + Xcc-8004.2476.1 0.21 -2.1
2,410,485 + Xcc-8004.2476.1 0.21 -1.7
2,410,485 + Xcc-8004.2476.1 0.21 +0.6
2,410,485 + Xcc-8004.2476.1 0.21 -3.1
2,410,485 + Xcc-8004.2476.1 0.21 +0.6
2,410,486 - Xcc-8004.2476.1 0.21 +1.5
2,410,486 - Xcc-8004.2476.1 0.21 +3.0
2,410,486 - Xcc-8004.2476.1 0.21 +1.1
2,410,486 - Xcc-8004.2476.1 0.21 -0.8
2,410,668 + Xcc-8004.2476.1 0.35 +0.5
2,410,668 + Xcc-8004.2476.1 0.35 +2.8
2,410,668 + Xcc-8004.2476.1 0.35 +2.1
2,410,668 + Xcc-8004.2476.1 0.35 +1.9
2,410,668 + Xcc-8004.2476.1 0.35 +2.0
2,410,668 + Xcc-8004.2476.1 0.35 -1.9
2,410,668 + Xcc-8004.2476.1 0.35 -0.3
2,410,668 + Xcc-8004.2476.1 0.35 -0.4
2,410,668 + Xcc-8004.2476.1 0.35 -0.0
2,410,668 + Xcc-8004.2476.1 0.35 -0.3
2,410,668 + Xcc-8004.2476.1 0.35 +1.4
2,410,668 + Xcc-8004.2476.1 0.35 +1.6
2,410,668 + Xcc-8004.2476.1 0.35 +2.1
2,410,668 + Xcc-8004.2476.1 0.35 -1.2
2,410,668 + Xcc-8004.2476.1 0.35 +1.7
2,410,668 + Xcc-8004.2476.1 0.35 -1.1
2,410,668 + Xcc-8004.2476.1 0.35 -2.0
2,410,668 + Xcc-8004.2476.1 0.35 +1.5
2,410,668 + Xcc-8004.2476.1 0.35 -1.8
2,410,668 + Xcc-8004.2476.1 0.35 -0.9
2,410,668 + Xcc-8004.2476.1 0.35 -1.7
2,410,669 - Xcc-8004.2476.1 0.35 +0.2
2,410,669 - Xcc-8004.2476.1 0.35 -1.8
2,410,669 - Xcc-8004.2476.1 0.35 -1.2
2,410,669 - Xcc-8004.2476.1 0.35 -0.5
2,410,669 - Xcc-8004.2476.1 0.35 -0.2
2,410,669 - Xcc-8004.2476.1 0.35 +0.7
2,410,669 - Xcc-8004.2476.1 0.35 -1.1
2,410,669 - Xcc-8004.2476.1 0.35 +0.6
2,410,669 - Xcc-8004.2476.1 0.35 -0.1
2,410,669 - Xcc-8004.2476.1 0.35 -0.0
2,410,671 - Xcc-8004.2476.1 0.35 -1.2
2,410,671 - Xcc-8004.2476.1 0.35 +1.1
2,410,827 + Xcc-8004.2476.1 0.47 +0.5
2,410,827 + Xcc-8004.2476.1 0.47 -0.5
2,410,827 + Xcc-8004.2476.1 0.47 -0.3
2,410,827 + Xcc-8004.2476.1 0.47 -0.9
2,410,827 + Xcc-8004.2476.1 0.47 +0.5
2,410,827 + Xcc-8004.2476.1 0.47 +2.5
2,410,827 + Xcc-8004.2476.1 0.47 -0.2
2,410,827 + Xcc-8004.2476.1 0.47 -1.7
2,410,827 + Xcc-8004.2476.1 0.47 -1.7
2,410,827 + Xcc-8004.2476.1 0.47 -1.1
2,410,827 + Xcc-8004.2476.1 0.47 -1.3
2,410,827 + Xcc-8004.2476.1 0.47 -2.1
2,410,827 + Xcc-8004.2476.1 0.47 -2.3
2,410,827 + Xcc-8004.2476.1 0.47 +1.8
2,410,827 + Xcc-8004.2476.1 0.47 -0.3
2,410,827 + Xcc-8004.2476.1 0.47 -0.5
2,410,827 + Xcc-8004.2476.1 0.47 -0.5
2,410,827 + Xcc-8004.2476.1 0.47 +0.9
2,410,827 + Xcc-8004.2476.1 0.47 -0.6
2,410,827 + Xcc-8004.2476.1 0.47 -0.2
2,410,828 - Xcc-8004.2476.1 0.47 -1.6
2,410,828 - Xcc-8004.2476.1 0.47 -0.1
2,410,828 - Xcc-8004.2476.1 0.47 -0.4
2,410,828 - Xcc-8004.2476.1 0.47 +1.8
2,410,828 - Xcc-8004.2476.1 0.47 -2.0
2,410,828 - Xcc-8004.2476.1 0.47 +2.4
2,410,828 - Xcc-8004.2476.1 0.47 -0.8
2,410,828 - Xcc-8004.2476.1 0.47 -0.9
2,410,828 - Xcc-8004.2476.1 0.47 -2.1
2,410,828 - Xcc-8004.2476.1 0.47 -3.4
2,410,828 - Xcc-8004.2476.1 0.47 +0.1
2,410,828 - Xcc-8004.2476.1 0.47 +0.7
2,410,828 - Xcc-8004.2476.1 0.47 -1.8
2,410,828 - Xcc-8004.2476.1 0.47 +0.5
2,410,828 - Xcc-8004.2476.1 0.47 +0.1
2,410,828 - Xcc-8004.2476.1 0.47 +0.1
2,410,828 - Xcc-8004.2476.1 0.47 +0.8
2,410,839 - Xcc-8004.2476.1 0.47 +3.5
2,410,965 + Xcc-8004.2476.1 0.57 +2.5
2,410,965 + Xcc-8004.2476.1 0.57 -0.0
2,411,037 + Xcc-8004.2476.1 0.62 +0.9
2,411,037 + Xcc-8004.2476.1 0.62 -0.4
2,411,037 + Xcc-8004.2476.1 0.62 +1.6
2,411,037 + Xcc-8004.2476.1 0.62 -0.8
2,411,037 + Xcc-8004.2476.1 0.62 -2.0
2,411,037 + Xcc-8004.2476.1 0.62 -0.4
2,411,038 - Xcc-8004.2476.1 0.62 -1.2
2,411,038 - Xcc-8004.2476.1 0.62 -1.7
2,411,038 - Xcc-8004.2476.1 0.62 +1.2
2,411,038 - Xcc-8004.2476.1 0.62 -1.2
2,411,038 - Xcc-8004.2476.1 0.62 +0.3
2,411,038 - Xcc-8004.2476.1 0.62 -1.6
2,411,038 - Xcc-8004.2476.1 0.62 -1.7
2,411,038 - Xcc-8004.2476.1 0.62 -1.2
2,411,038 - Xcc-8004.2476.1 0.62 +0.5
2,411,038 - Xcc-8004.2476.1 0.62 -1.7

Or see this region's nucleotide sequence