Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.244.1 and Xcc-8004.245.1 are separated by 90 nucleotides Xcc-8004.245.1 and Xcc-8004.247.1 are separated by 172 nucleotides
Xcc-8004.244.1: Xcc-8004.244.1 - FIG01209881: hypothetical protein, at 239,957 to 240,781
Xcc-8004.244.1
Xcc-8004.245.1: Xcc-8004.245.1 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 240,872 to 241,714
Xcc-8004.245.1
Xcc-8004.247.1: Xcc-8004.247.1 - Glutamine synthetase type I (EC 6.3.1.2), at 241,887 to 243,296
Xcc-8004.247.1
Position (kb) 240
241
242 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 239.895 kb on - strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.938 kb on + strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.939 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.946 kb on - strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.991 kb on + strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 239.992 kb on - strand at 240.210 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.466 kb on - strand, within Xcc-8004.244.1 at 240.543 kb on - strand, within Xcc-8004.244.1 at 240.617 kb on + strand, within Xcc-8004.244.1 at 240.618 kb on - strand, within Xcc-8004.244.1 at 240.764 kb on + strand at 240.765 kb on - strand at 241.699 kb on + strand at 241.699 kb on + strand at 241.700 kb on - strand at 241.744 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.842 kb on + strand at 241.845 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand at 241.863 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 239,895 - -0.0 239,938 + -0.3 239,938 + -2.0 239,938 + -0.1 239,938 + -1.5 239,938 + +0.7 239,938 + -0.3 239,939 - -1.2 239,939 - +2.0 239,939 - -0.3 239,939 - +2.6 239,939 - +0.6 239,946 - +1.0 239,946 - -0.0 239,946 - +0.2 239,991 + +0.0 239,991 + -2.1 239,991 + +0.8 239,991 + -1.3 239,991 + -1.6 239,992 - -2.3 239,992 - +0.3 239,992 - -1.5 239,992 - -2.0 239,992 - -1.0 239,992 - -0.7 240,210 - Xcc-8004.244.1 0.31 -2.3 240,466 - Xcc-8004.244.1 0.62 +1.3 240,466 - Xcc-8004.244.1 0.62 -0.3 240,543 - Xcc-8004.244.1 0.71 -0.4 240,617 + Xcc-8004.244.1 0.80 +0.7 240,618 - Xcc-8004.244.1 0.80 +1.0 240,764 + -0.1 240,765 - +1.8 241,699 + -0.3 241,699 + -1.0 241,700 - +1.4 241,744 + -0.5 241,842 + +0.3 241,842 + -0.5 241,842 + +0.1 241,842 + +1.1 241,842 + +0.9 241,842 + +0.9 241,842 + +1.2 241,845 + +0.5 241,863 + -0.1 241,863 + +1.2 241,863 + +0.9 241,863 + -1.2 241,863 + +0.9 241,863 + -0.8 241,863 + +1.5 241,863 + -1.6 241,863 + -1.2 241,863 + -1.0 241,863 + -0.4 241,863 + -3.7
Or see this region's nucleotide sequence