Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2401.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2399.1 and Xcc-8004.2400.1 overlap by 4 nucleotidesXcc-8004.2400.1 and Xcc-8004.2401.1 overlap by 4 nucleotidesXcc-8004.2401.1 and Xcc-8004.2402.1 overlap by 4 nucleotides Xcc-8004.2399.1: Xcc-8004.2399.1 - FIG024214: Transcriptional regulator, AraC family, at 2,343,901 to 2,344,368 Xcc-8004.2399.1 Xcc-8004.2400.1: Xcc-8004.2400.1 - hypothetical protein, at 2,344,365 to 2,345,021 Xcc-8004.2400.1 Xcc-8004.2401.1: Xcc-8004.2401.1 - FIG00545367: hypothetical protein, at 2,345,018 to 2,345,455 Xcc-8004.2401.1 Xcc-8004.2402.1: Xcc-8004.2402.1 - Exoenzymes regulatory protein AepA precursor, at 2,345,452 to 2,347,410 Xcc-8004.2402.1 Position (kb) 2345 2346Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2344.117 kb on + strand, within Xcc-8004.2399.1at 2344.117 kb on + strand, within Xcc-8004.2399.1at 2344.117 kb on + strand, within Xcc-8004.2399.1at 2344.118 kb on - strand, within Xcc-8004.2399.1at 2344.776 kb on + strand, within Xcc-8004.2400.1at 2344.776 kb on + strand, within Xcc-8004.2400.1at 2344.776 kb on + strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.777 kb on - strand, within Xcc-8004.2400.1at 2344.878 kb on + strand, within Xcc-8004.2400.1at 2344.878 kb on + strand, within Xcc-8004.2400.1at 2344.879 kb on - strand, within Xcc-8004.2400.1at 2344.879 kb on - strand, within Xcc-8004.2400.1at 2344.879 kb on - strand, within Xcc-8004.2400.1at 2344.879 kb on - strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.920 kb on + strand, within Xcc-8004.2400.1at 2344.921 kb on - strand, within Xcc-8004.2400.1at 2344.921 kb on - strand, within Xcc-8004.2400.1at 2344.973 kb on + strandat 2344.973 kb on + strandat 2344.973 kb on + strandat 2344.981 kb on - strandat 2344.981 kb on - strandat 2345.360 kb on + strand, within Xcc-8004.2401.1at 2345.361 kb on - strand, within Xcc-8004.2401.1at 2345.398 kb on - strand, within Xcc-8004.2401.1at 2345.589 kb on + strandat 2345.590 kb on - strandat 2345.590 kb on - strandat 2345.598 kb on + strandat 2345.598 kb on + strandat 2345.598 kb on + strandat 2345.598 kb on + strandat 2345.598 kb on + strandat 2345.599 kb on - strandat 2345.599 kb on - strandat 2345.599 kb on - strandat 2345.635 kb on - strandat 2345.791 kb on + strand, within Xcc-8004.2402.1at 2346.043 kb on + strand, within Xcc-8004.2402.1at 2346.145 kb on + strand, within Xcc-8004.2402.1at 2346.146 kb on - strand, within Xcc-8004.2402.1at 2346.146 kb on - strand, within Xcc-8004.2402.1at 2346.185 kb on - strand, within Xcc-8004.2402.1at 2346.286 kb on + strand, within Xcc-8004.2402.1at 2346.286 kb on + strand, within Xcc-8004.2402.1at 2346.286 kb on + strand, within Xcc-8004.2402.1at 2346.286 kb on + strand, within Xcc-8004.2402.1at 2346.286 kb on + strand, within Xcc-8004.2402.1at 2346.287 kb on - strand, within Xcc-8004.2402.1at 2346.287 kb on - strand, within Xcc-8004.2402.1at 2346.287 kb on - strand, within Xcc-8004.2402.1at 2346.340 kb on + strand, within Xcc-8004.2402.1at 2346.340 kb on + strand, within Xcc-8004.2402.1at 2346.341 kb on - strand, within Xcc-8004.2402.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,344,117 + Xcc-8004.2399.1 0.46 +0.2
2,344,117 + Xcc-8004.2399.1 0.46 -0.4
2,344,117 + Xcc-8004.2399.1 0.46 +0.0
2,344,118 - Xcc-8004.2399.1 0.46 +1.6
2,344,776 + Xcc-8004.2400.1 0.63 +0.5
2,344,776 + Xcc-8004.2400.1 0.63 +0.7
2,344,776 + Xcc-8004.2400.1 0.63 +0.2
2,344,777 - Xcc-8004.2400.1 0.63 +0.6
2,344,777 - Xcc-8004.2400.1 0.63 -1.0
2,344,777 - Xcc-8004.2400.1 0.63 -0.3
2,344,777 - Xcc-8004.2400.1 0.63 +0.2
2,344,777 - Xcc-8004.2400.1 0.63 +2.0
2,344,777 - Xcc-8004.2400.1 0.63 -0.2
2,344,777 - Xcc-8004.2400.1 0.63 -0.4
2,344,878 + Xcc-8004.2400.1 0.78 -2.0
2,344,878 + Xcc-8004.2400.1 0.78 -1.4
2,344,879 - Xcc-8004.2400.1 0.78 +0.2
2,344,879 - Xcc-8004.2400.1 0.78 +0.4
2,344,879 - Xcc-8004.2400.1 0.78 -0.1
2,344,879 - Xcc-8004.2400.1 0.78 +0.2
2,344,920 + Xcc-8004.2400.1 0.84 +0.5
2,344,920 + Xcc-8004.2400.1 0.84 -0.8
2,344,920 + Xcc-8004.2400.1 0.84 -1.5
2,344,920 + Xcc-8004.2400.1 0.84 -0.1
2,344,920 + Xcc-8004.2400.1 0.84 -0.5
2,344,920 + Xcc-8004.2400.1 0.84 -0.8
2,344,920 + Xcc-8004.2400.1 0.84 +0.2
2,344,920 + Xcc-8004.2400.1 0.84 -0.4
2,344,921 - Xcc-8004.2400.1 0.85 -1.5
2,344,921 - Xcc-8004.2400.1 0.85 +1.5
2,344,973 + -2.1
2,344,973 + +0.9
2,344,973 + +1.2
2,344,981 - -0.9
2,344,981 - -1.7
2,345,360 + Xcc-8004.2401.1 0.78 +3.0
2,345,361 - Xcc-8004.2401.1 0.78 -0.5
2,345,398 - Xcc-8004.2401.1 0.87 +0.7
2,345,589 + -0.0
2,345,590 - -1.6
2,345,590 - +0.4
2,345,598 + +0.8
2,345,598 + -0.5
2,345,598 + -0.0
2,345,598 + -0.3
2,345,598 + -0.3
2,345,599 - -0.5
2,345,599 - -1.9
2,345,599 - -2.9
2,345,635 - +1.3
2,345,791 + Xcc-8004.2402.1 0.17 -0.1
2,346,043 + Xcc-8004.2402.1 0.30 +1.5
2,346,145 + Xcc-8004.2402.1 0.35 +2.0
2,346,146 - Xcc-8004.2402.1 0.35 -1.6
2,346,146 - Xcc-8004.2402.1 0.35 -2.5
2,346,185 - Xcc-8004.2402.1 0.37 -0.9
2,346,286 + Xcc-8004.2402.1 0.43 -0.1
2,346,286 + Xcc-8004.2402.1 0.43 +0.4
2,346,286 + Xcc-8004.2402.1 0.43 +0.0
2,346,286 + Xcc-8004.2402.1 0.43 +1.9
2,346,286 + Xcc-8004.2402.1 0.43 -1.7
2,346,287 - Xcc-8004.2402.1 0.43 -0.7
2,346,287 - Xcc-8004.2402.1 0.43 -0.2
2,346,287 - Xcc-8004.2402.1 0.43 +0.3
2,346,340 + Xcc-8004.2402.1 0.45 -2.2
2,346,340 + Xcc-8004.2402.1 0.45 +0.1
2,346,341 - Xcc-8004.2402.1 0.45 +0.2

Or see this region's nucleotide sequence