Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2266.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 3 4 dpi (25 plantes)
2,219,921	-		Xcc-8004.2264.1	0.76	+0.2
2,219,921	-		Xcc-8004.2264.1	0.76	+0.5
2,219,968	+		Xcc-8004.2264.1	0.80	+1.2
2,220,035	+		Xcc-8004.2264.1	0.86	-0.4
2,220,036	-		Xcc-8004.2264.1	0.86	-2.8
2,220,284	+		Xcc-8004.2265.1	0.16	+0.8
2,220,284	+		Xcc-8004.2265.1	0.16	-0.3
2,220,284	+		Xcc-8004.2265.1	0.16	+0.1
2,220,284	+		Xcc-8004.2265.1	0.16	-1.1
2,220,284	+		Xcc-8004.2265.1	0.16	-0.1
2,220,284	+		Xcc-8004.2265.1	0.16	-1.4
2,220,284	+		Xcc-8004.2265.1	0.16	+1.2
2,220,284	+		Xcc-8004.2265.1	0.16	-3.0
2,220,284	+		Xcc-8004.2265.1	0.16	+0.3
2,220,284	+		Xcc-8004.2265.1	0.16	+0.7
2,220,284	+		Xcc-8004.2265.1	0.16	+0.9
2,220,284	+		Xcc-8004.2265.1	0.16	-0.9
2,220,284	+		Xcc-8004.2265.1	0.16	-1.2
2,220,284	+		Xcc-8004.2265.1	0.16	-0.6
2,220,284	+		Xcc-8004.2265.1	0.16	+0.4
2,220,285	-		Xcc-8004.2265.1	0.16	-0.3
2,220,285	-		Xcc-8004.2265.1	0.16	+1.7
2,220,285	-		Xcc-8004.2265.1	0.16	+1.1
2,220,285	-		Xcc-8004.2265.1	0.16	+5.1
2,220,285	-		Xcc-8004.2265.1	0.16	-0.7
2,220,285	-		Xcc-8004.2265.1	0.16	+0.4
2,220,285	-		Xcc-8004.2265.1	0.16	+0.6
2,220,285	-		Xcc-8004.2265.1	0.16	-0.2
2,220,285	-		Xcc-8004.2265.1	0.16	+2.3
2,220,285	-		Xcc-8004.2265.1	0.16	+4.0
2,220,285	-		Xcc-8004.2265.1	0.16	+0.5
2,220,426	+		Xcc-8004.2265.1	0.42	+2.6
2,220,525	+		Xcc-8004.2265.1	0.60	-1.3
2,220,526	-		Xcc-8004.2265.1	0.60	+0.6
2,220,526	-		Xcc-8004.2265.1	0.60	-1.2
2,220,526	-		Xcc-8004.2265.1	0.60	-0.7
2,220,526	-		Xcc-8004.2265.1	0.60	-0.3
2,220,526	-		Xcc-8004.2265.1	0.60	+0.7
2,220,526	-		Xcc-8004.2265.1	0.60	+0.5
2,220,539	+		Xcc-8004.2265.1	0.62	-1.5
2,220,539	+		Xcc-8004.2265.1	0.62	+0.4
2,220,539	+		Xcc-8004.2265.1	0.62	+0.0
2,220,539	+		Xcc-8004.2265.1	0.62	-0.6
2,220,539	+		Xcc-8004.2265.1	0.62	-1.3
2,220,539	+		Xcc-8004.2265.1	0.62	-1.0
2,220,539	+		Xcc-8004.2265.1	0.62	+0.9
2,220,540	-		Xcc-8004.2265.1	0.62	-0.5
2,220,540	-		Xcc-8004.2265.1	0.62	+0.8
2,220,540	-		Xcc-8004.2265.1	0.62	+1.3
2,220,540	-		Xcc-8004.2265.1	0.62	+0.9
2,220,540	-		Xcc-8004.2265.1	0.62	-0.9
2,220,540	-		Xcc-8004.2265.1	0.62	-0.1
2,220,540	-		Xcc-8004.2265.1	0.62	-1.0
2,220,540	-		Xcc-8004.2265.1	0.62	+0.4
2,220,681	+		Xcc-8004.2265.1	0.88	-1.3
2,220,681	+		Xcc-8004.2265.1	0.88	-0.2
2,220,681	+		Xcc-8004.2265.1	0.88	+0.7
2,220,681	+		Xcc-8004.2265.1	0.88	+1.5
2,220,681	+		Xcc-8004.2265.1	0.88	+0.1
2,220,681	+		Xcc-8004.2265.1	0.88	-0.9
2,220,681	+		Xcc-8004.2265.1	0.88	-0.5
2,220,682	-		Xcc-8004.2265.1	0.88	+1.7
2,220,682	-		Xcc-8004.2265.1	0.88	+2.3
2,220,682	-		Xcc-8004.2265.1	0.88	+1.0
2,220,682	-		Xcc-8004.2265.1	0.88	-0.3
2,220,682	-		Xcc-8004.2265.1	0.88	+0.0
2,220,682	-		Xcc-8004.2265.1	0.88	+0.6
2,220,682	-		Xcc-8004.2265.1	0.88	+1.0
2,220,682	-		Xcc-8004.2265.1	0.88	-0.1
2,220,682	-		Xcc-8004.2265.1	0.88	+0.4
2,220,682	-		Xcc-8004.2265.1	0.88	-0.9
2,220,682	-		Xcc-8004.2265.1	0.88	+0.2
2,220,776	+				+0.5
2,220,777	-				-0.2
2,220,777	-				-2.0
2,220,777	-				-1.2
2,220,777	-				-2.4
2,221,014	+		Xcc-8004.2266.1	0.43	+1.1
2,221,047	+		Xcc-8004.2266.1	0.50	+0.6
2,221,047	+		Xcc-8004.2266.1	0.50	+0.2
2,221,048	-		Xcc-8004.2266.1	0.51	+1.2
2,221,280	+				-0.9
2,221,824	-				-1.8
2,221,824	-				-1.5
2,221,922	+				+0.1
2,221,922	+				-1.3
2,221,922	+				-2.8
2,221,922	+				+2.6
2,221,922	+				-0.2
2,221,922	+				-1.8
2,221,922	+				-1.5
2,221,922	+				+0.0
2,221,922	+				+2.3
2,221,922	+				+1.2
2,221,922	+				+1.3
2,221,922	+				+1.2
2,221,922	+				-0.9
2,221,922	+				+2.2
2,221,922	+				-1.7
2,221,922	+				+0.3
2,221,922	+				-2.0
2,221,922	+				-0.4
2,221,922	+				-0.4
2,221,922	+				+2.0
2,221,922	+				+0.3
2,221,922	+				+2.0
2,221,922	+				-0.7
2,221,922	+				+1.4
2,221,922	+				+1.5
2,221,922	+				+0.4
2,221,923	-				+0.5
2,221,923	-				-0.9
2,221,923	-				-2.1
2,221,923	-				-1.2
2,221,923	-				-0.1
2,221,923	-				+0.6
2,221,923	-				-0.9
2,221,923	-				+0.1
2,221,923	-				+0.3
2,221,923	-				-0.9
2,221,923	-				-1.8
2,221,923	-				-2.0
2,221,923	-				-0.7
2,221,923	-				+1.3
2,221,923	-				-0.5
2,221,923	-				-0.5
2,221,923	-				+0.9
2,221,923	-				-0.1
2,221,923	-				+0.8
2,221,923	-				-2.0
2,221,923	-				-2.1
2,221,923	-				+0.4
2,221,923	-				-2.2
2,221,923	-				-0.3
2,221,923	-				-0.0
2,221,932	+				+0.1
2,221,970	+				+1.8
2,221,970	+				-0.2
2,221,970	+				+1.7
2,221,970	+				-0.6
2,221,970	+				+0.4
2,221,970	+				-0.2
2,221,970	+				-0.4
2,221,970	+				-1.4
2,221,971	-				-1.0
2,221,971	-				-1.2
2,221,971	-				+3.6
2,221,971	-				+0.0
2,221,971	-				+1.6
2,221,971	-				+0.5
2,221,971	-				+1.3
2,221,971	-				+0.6
2,221,988	+				+1.9
2,221,988	+				+1.0
2,221,988	+				+1.1
2,221,988	+				-0.0
2,221,989	-				-1.9
2,221,989	-				-0.4
2,221,989	-				-0.4
2,221,989	-				-0.4
2,221,989	-				+1.2
2,221,989	-				-1.4
2,222,178	+		Xcc-8004.2270.1	0.30	+2.3
2,222,179	-		Xcc-8004.2270.1	0.31	+0.3
2,222,179	-		Xcc-8004.2270.1	0.31	-1.0
2,222,179	-		Xcc-8004.2270.1	0.31	+3.2
2,222,179	-		Xcc-8004.2270.1	0.31	-3.1
2,222,193	+		Xcc-8004.2270.1	0.33	-2.0
2,222,193	+		Xcc-8004.2270.1	0.33	-2.0
2,222,194	-		Xcc-8004.2270.1	0.33	-1.0
2,222,274	+		Xcc-8004.2270.1	0.44	+0.9
2,222,274	+		Xcc-8004.2270.1	0.44	-1.3
2,222,274	+		Xcc-8004.2270.1	0.44	-1.6
2,222,274	+		Xcc-8004.2270.1	0.44	+1.6
2,222,275	-		Xcc-8004.2270.1	0.44	-0.8
2,222,275	-		Xcc-8004.2270.1	0.44	+2.2