Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2089.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2088.1 and Xcc-8004.2089.1 are separated by 64 nucleotidesXcc-8004.2089.1 and Xcc-8004.2091.1 are separated by 40 nucleotidesXcc-8004.2091.1 and Xcc-8004.2092.1 are separated by 7 nucleotides Xcc-8004.2088.1: Xcc-8004.2088.1 - Xanthan biosynthesis oligosaccharidyl-lipid flippase GumJ, at 2,003,326 to 2,004,825 Xcc-8004.2088.1 Xcc-8004.2089.1: Xcc-8004.2089.1 - Xanthan biosynthesis glucuronosyltransferase GumK, at 2,004,890 to 2,006,092 Xcc-8004.2089.1 Xcc-8004.2091.1: Xcc-8004.2091.1 - Xanthan biosynthesis pyruvyltransferase GumL, at 2,006,133 to 2,006,927 Xcc-8004.2091.1 Xcc-8004.2092.1: Xcc-8004.2092.1 - Xanthan biosynthesis glycosyltransferase GumM, at 2,006,935 to 2,007,726 Xcc-8004.2092.1 Position (kb) 2004 2005 2006 2007Strain fitness (log2 ratio) -1 0 1 2 3 4at 2004.890 kb on - strandat 2004.890 kb on - strandat 2004.938 kb on + strandat 2004.939 kb on - strandat 2005.075 kb on + strand, within Xcc-8004.2089.1at 2005.075 kb on + strand, within Xcc-8004.2089.1at 2005.076 kb on - strand, within Xcc-8004.2089.1at 2005.076 kb on - strand, within Xcc-8004.2089.1at 2005.218 kb on - strand, within Xcc-8004.2089.1at 2005.346 kb on + strand, within Xcc-8004.2089.1at 2005.388 kb on + strand, within Xcc-8004.2089.1at 2005.389 kb on - strand, within Xcc-8004.2089.1at 2005.389 kb on - strand, within Xcc-8004.2089.1at 2005.495 kb on - strand, within Xcc-8004.2089.1at 2005.697 kb on + strand, within Xcc-8004.2089.1at 2005.698 kb on - strand, within Xcc-8004.2089.1at 2005.733 kb on - strand, within Xcc-8004.2089.1at 2005.890 kb on - strand, within Xcc-8004.2089.1at 2005.953 kb on + strand, within Xcc-8004.2089.1at 2005.954 kb on - strand, within Xcc-8004.2089.1at 2005.954 kb on - strand, within Xcc-8004.2089.1at 2005.954 kb on - strand, within Xcc-8004.2089.1at 2006.403 kb on - strand, within Xcc-8004.2091.1at 2006.422 kb on + strand, within Xcc-8004.2091.1at 2006.602 kb on - strand, within Xcc-8004.2091.1at 2006.602 kb on - strand, within Xcc-8004.2091.1at 2006.724 kb on + strand, within Xcc-8004.2091.1at 2006.724 kb on + strand, within Xcc-8004.2091.1at 2006.725 kb on - strand, within Xcc-8004.2091.1at 2006.742 kb on + strand, within Xcc-8004.2091.1at 2006.743 kb on - strand, within Xcc-8004.2091.1at 2006.779 kb on - strand, within Xcc-8004.2091.1at 2006.787 kb on + strand, within Xcc-8004.2091.1at 2006.787 kb on + strand, within Xcc-8004.2091.1at 2006.788 kb on - strand, within Xcc-8004.2091.1at 2006.788 kb on - strand, within Xcc-8004.2091.1at 2006.790 kb on + strand, within Xcc-8004.2091.1at 2006.791 kb on - strand, within Xcc-8004.2091.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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2,004,890 - +2.8
2,004,890 - +4.5
2,004,938 + +0.9
2,004,939 - +0.2
2,005,075 + Xcc-8004.2089.1 0.15 +1.7
2,005,075 + Xcc-8004.2089.1 0.15 -0.3
2,005,076 - Xcc-8004.2089.1 0.15 +2.0
2,005,076 - Xcc-8004.2089.1 0.15 +0.9
2,005,218 - Xcc-8004.2089.1 0.27 -0.1
2,005,346 + Xcc-8004.2089.1 0.38 +2.2
2,005,388 + Xcc-8004.2089.1 0.41 +0.4
2,005,389 - Xcc-8004.2089.1 0.41 +0.3
2,005,389 - Xcc-8004.2089.1 0.41 -0.0
2,005,495 - Xcc-8004.2089.1 0.50 +0.0
2,005,697 + Xcc-8004.2089.1 0.67 -1.4
2,005,698 - Xcc-8004.2089.1 0.67 +0.2
2,005,733 - Xcc-8004.2089.1 0.70 +0.6
2,005,890 - Xcc-8004.2089.1 0.83 +2.1
2,005,953 + Xcc-8004.2089.1 0.88 -0.5
2,005,954 - Xcc-8004.2089.1 0.88 +1.9
2,005,954 - Xcc-8004.2089.1 0.88 +0.6
2,005,954 - Xcc-8004.2089.1 0.88 -1.1
2,006,403 - Xcc-8004.2091.1 0.34 +1.7
2,006,422 + Xcc-8004.2091.1 0.36 +0.9
2,006,602 - Xcc-8004.2091.1 0.59 +0.3
2,006,602 - Xcc-8004.2091.1 0.59 +2.2
2,006,724 + Xcc-8004.2091.1 0.74 -1.2
2,006,724 + Xcc-8004.2091.1 0.74 +0.4
2,006,725 - Xcc-8004.2091.1 0.74 -1.1
2,006,742 + Xcc-8004.2091.1 0.77 +4.5
2,006,743 - Xcc-8004.2091.1 0.77 +2.5
2,006,779 - Xcc-8004.2091.1 0.81 +1.5
2,006,787 + Xcc-8004.2091.1 0.82 +1.4
2,006,787 + Xcc-8004.2091.1 0.82 -0.5
2,006,788 - Xcc-8004.2091.1 0.82 +0.0
2,006,788 - Xcc-8004.2091.1 0.82 -0.2
2,006,790 + Xcc-8004.2091.1 0.83 +0.6
2,006,791 - Xcc-8004.2091.1 0.83 +0.6

Or see this region's nucleotide sequence