Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2082.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2081.1 and Xcc-8004.2082.1 are separated by 242 nucleotidesXcc-8004.2082.1 and Xcc-8004.2083.1 are separated by 82 nucleotides Xcc-8004.2081.1: Xcc-8004.2081.1 - Xanthan biosynthesis chain length determinant protein GumC, at 1,994,413 to 1,995,837 Xcc-8004.2081.1 Xcc-8004.2082.1: Xcc-8004.2082.1 - Xanthan biosynthesis glycosyltransferase GumD, at 1,996,080 to 1,997,534 Xcc-8004.2082.1 Xcc-8004.2083.1: Xcc-8004.2083.1 - Xanthan biosynthesis exopolysaccharide polymerase GumE, at 1,997,617 to 1,998,915 Xcc-8004.2083.1 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.479 kb on - strand, within Xcc-8004.2081.1at 1995.572 kb on - strand, within Xcc-8004.2081.1at 1995.635 kb on - strand, within Xcc-8004.2081.1at 1995.635 kb on - strand, within Xcc-8004.2081.1at 1995.706 kb on - strandat 1995.706 kb on - strandat 1995.706 kb on - strandat 1995.765 kb on - strandat 1995.796 kb on + strandat 1995.797 kb on - strandat 1995.797 kb on - strandat 1995.863 kb on + strandat 1995.864 kb on - strandat 1995.864 kb on - strandat 1995.864 kb on - strandat 1995.924 kb on + strandat 1995.980 kb on + strandat 1995.980 kb on + strandat 1995.981 kb on - strandat 1995.981 kb on - strandat 1995.984 kb on + strandat 1995.984 kb on + strandat 1995.984 kb on + strandat 1995.984 kb on + strandat 1995.985 kb on - strandat 1995.985 kb on - strandat 1995.985 kb on - strandat 1995.985 kb on - strandat 1995.985 kb on - strandat 1995.985 kb on - strandat 1996.036 kb on + strandat 1996.036 kb on + strandat 1996.036 kb on + strandat 1996.037 kb on - strandat 1996.037 kb on - strandat 1996.037 kb on - strandat 1996.037 kb on - strandat 1996.037 kb on - strandat 1996.037 kb on - strandat 1996.101 kb on - strandat 1996.110 kb on + strandat 1996.110 kb on + strandat 1996.111 kb on - strandat 1996.111 kb on - strandat 1996.111 kb on - strandat 1996.144 kb on - strandat 1996.216 kb on - strandat 1996.216 kb on - strandat 1996.232 kb on + strand, within Xcc-8004.2082.1at 1996.233 kb on - strand, within Xcc-8004.2082.1at 1996.254 kb on + strand, within Xcc-8004.2082.1at 1996.284 kb on + strand, within Xcc-8004.2082.1at 1996.307 kb on - strand, within Xcc-8004.2082.1at 1996.318 kb on - strand, within Xcc-8004.2082.1at 1996.529 kb on + strand, within Xcc-8004.2082.1at 1996.529 kb on + strand, within Xcc-8004.2082.1at 1996.599 kb on + strand, within Xcc-8004.2082.1at 1996.599 kb on + strand, within Xcc-8004.2082.1at 1996.599 kb on + strand, within Xcc-8004.2082.1at 1996.599 kb on + strand, within Xcc-8004.2082.1at 1996.599 kb on + strand, within Xcc-8004.2082.1at 1996.600 kb on - strand, within Xcc-8004.2082.1at 1996.600 kb on - strand, within Xcc-8004.2082.1at 1996.600 kb on - strand, within Xcc-8004.2082.1at 1996.641 kb on + strand, within Xcc-8004.2082.1at 1996.657 kb on - strand, within Xcc-8004.2082.1at 1996.657 kb on - strand, within Xcc-8004.2082.1at 1996.657 kb on - strand, within Xcc-8004.2082.1at 1996.937 kb on + strand, within Xcc-8004.2082.1at 1996.937 kb on + strand, within Xcc-8004.2082.1at 1996.938 kb on - strand, within Xcc-8004.2082.1at 1996.941 kb on + strand, within Xcc-8004.2082.1at 1996.941 kb on + strand, within Xcc-8004.2082.1at 1996.941 kb on + strand, within Xcc-8004.2082.1at 1996.941 kb on + strand, within Xcc-8004.2082.1at 1996.942 kb on - strand, within Xcc-8004.2082.1at 1996.942 kb on - strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.103 kb on + strand, within Xcc-8004.2082.1at 1997.104 kb on - strand, within Xcc-8004.2082.1at 1997.104 kb on - strand, within Xcc-8004.2082.1at 1997.104 kb on - strand, within Xcc-8004.2082.1at 1997.104 kb on - strand, within Xcc-8004.2082.1at 1997.310 kb on + strand, within Xcc-8004.2082.1at 1997.310 kb on + strand, within Xcc-8004.2082.1at 1997.331 kb on + strand, within Xcc-8004.2082.1at 1997.331 kb on + strand, within Xcc-8004.2082.1at 1997.331 kb on + strand, within Xcc-8004.2082.1at 1997.331 kb on + strand, within Xcc-8004.2082.1at 1997.331 kb on + strand, within Xcc-8004.2082.1at 1997.332 kb on - strand, within Xcc-8004.2082.1at 1997.332 kb on - strand, within Xcc-8004.2082.1at 1997.346 kb on + strand, within Xcc-8004.2082.1at 1997.346 kb on + strand, within Xcc-8004.2082.1at 1997.346 kb on + strand, within Xcc-8004.2082.1at 1997.346 kb on + strand, within Xcc-8004.2082.1at 1997.347 kb on - strand, within Xcc-8004.2082.1at 1997.347 kb on - strand, within Xcc-8004.2082.1at 1997.364 kb on - strand, within Xcc-8004.2082.1at 1997.436 kb on + strandat 1997.437 kb on - strandat 1997.448 kb on + strandat 1997.448 kb on + strandat 1997.448 kb on + strandat 1997.448 kb on + strandat 1997.448 kb on + strandat 1997.449 kb on - strandat 1997.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,995,479 - Xcc-8004.2081.1 0.75 -1.1
1,995,479 - Xcc-8004.2081.1 0.75 -2.7
1,995,479 - Xcc-8004.2081.1 0.75 +0.2
1,995,479 - Xcc-8004.2081.1 0.75 -1.0
1,995,479 - Xcc-8004.2081.1 0.75 -0.5
1,995,479 - Xcc-8004.2081.1 0.75 -0.1
1,995,572 - Xcc-8004.2081.1 0.81 -0.5
1,995,635 - Xcc-8004.2081.1 0.86 -1.3
1,995,635 - Xcc-8004.2081.1 0.86 -2.3
1,995,706 - +1.1
1,995,706 - -0.3
1,995,706 - -2.2
1,995,765 - -1.5
1,995,796 + +1.9
1,995,797 - +2.4
1,995,797 - +1.3
1,995,863 + -1.0
1,995,864 - +0.5
1,995,864 - +0.2
1,995,864 - +0.7
1,995,924 + -0.7
1,995,980 + +1.8
1,995,980 + +2.3
1,995,981 - +1.0
1,995,981 - +1.9
1,995,984 + +1.3
1,995,984 + -1.0
1,995,984 + +0.7
1,995,984 + +0.9
1,995,985 - +1.5
1,995,985 - +0.2
1,995,985 - +2.5
1,995,985 - +2.5
1,995,985 - +0.5
1,995,985 - +0.6
1,996,036 + +1.2
1,996,036 + +1.0
1,996,036 + +0.8
1,996,037 - -0.1
1,996,037 - +0.6
1,996,037 - -0.3
1,996,037 - +2.3
1,996,037 - -1.4
1,996,037 - +0.1
1,996,101 - +0.5
1,996,110 + +0.8
1,996,110 + +2.1
1,996,111 - +1.3
1,996,111 - +3.4
1,996,111 - -0.7
1,996,144 - -0.0
1,996,216 - +1.7
1,996,216 - -0.7
1,996,232 + Xcc-8004.2082.1 0.10 -1.0
1,996,233 - Xcc-8004.2082.1 0.11 +1.8
1,996,254 + Xcc-8004.2082.1 0.12 +1.5
1,996,284 + Xcc-8004.2082.1 0.14 +0.2
1,996,307 - Xcc-8004.2082.1 0.16 -0.5
1,996,318 - Xcc-8004.2082.1 0.16 +0.1
1,996,529 + Xcc-8004.2082.1 0.31 +1.1
1,996,529 + Xcc-8004.2082.1 0.31 -0.7
1,996,599 + Xcc-8004.2082.1 0.36 -2.0
1,996,599 + Xcc-8004.2082.1 0.36 +4.4
1,996,599 + Xcc-8004.2082.1 0.36 +1.6
1,996,599 + Xcc-8004.2082.1 0.36 +1.5
1,996,599 + Xcc-8004.2082.1 0.36 +0.8
1,996,600 - Xcc-8004.2082.1 0.36 +0.6
1,996,600 - Xcc-8004.2082.1 0.36 +2.1
1,996,600 - Xcc-8004.2082.1 0.36 +1.5
1,996,641 + Xcc-8004.2082.1 0.39 +1.7
1,996,657 - Xcc-8004.2082.1 0.40 -0.4
1,996,657 - Xcc-8004.2082.1 0.40 +0.7
1,996,657 - Xcc-8004.2082.1 0.40 +0.9
1,996,937 + Xcc-8004.2082.1 0.59 -0.4
1,996,937 + Xcc-8004.2082.1 0.59 +0.4
1,996,938 - Xcc-8004.2082.1 0.59 +1.2
1,996,941 + Xcc-8004.2082.1 0.59 -0.4
1,996,941 + Xcc-8004.2082.1 0.59 -0.8
1,996,941 + Xcc-8004.2082.1 0.59 +1.1
1,996,941 + Xcc-8004.2082.1 0.59 +0.6
1,996,942 - Xcc-8004.2082.1 0.59 -0.6
1,996,942 - Xcc-8004.2082.1 0.59 +2.0
1,997,103 + Xcc-8004.2082.1 0.70 -2.1
1,997,103 + Xcc-8004.2082.1 0.70 +0.0
1,997,103 + Xcc-8004.2082.1 0.70 +0.3
1,997,103 + Xcc-8004.2082.1 0.70 +0.5
1,997,103 + Xcc-8004.2082.1 0.70 -1.3
1,997,103 + Xcc-8004.2082.1 0.70 -1.5
1,997,103 + Xcc-8004.2082.1 0.70 +0.9
1,997,103 + Xcc-8004.2082.1 0.70 -2.0
1,997,103 + Xcc-8004.2082.1 0.70 +1.3
1,997,104 - Xcc-8004.2082.1 0.70 +2.1
1,997,104 - Xcc-8004.2082.1 0.70 +0.7
1,997,104 - Xcc-8004.2082.1 0.70 -0.7
1,997,104 - Xcc-8004.2082.1 0.70 +1.3
1,997,310 + Xcc-8004.2082.1 0.85 -0.7
1,997,310 + Xcc-8004.2082.1 0.85 -0.3
1,997,331 + Xcc-8004.2082.1 0.86 +1.8
1,997,331 + Xcc-8004.2082.1 0.86 +2.8
1,997,331 + Xcc-8004.2082.1 0.86 -1.0
1,997,331 + Xcc-8004.2082.1 0.86 +0.7
1,997,331 + Xcc-8004.2082.1 0.86 -0.0
1,997,332 - Xcc-8004.2082.1 0.86 +0.1
1,997,332 - Xcc-8004.2082.1 0.86 -1.1
1,997,346 + Xcc-8004.2082.1 0.87 +0.8
1,997,346 + Xcc-8004.2082.1 0.87 -0.1
1,997,346 + Xcc-8004.2082.1 0.87 +0.8
1,997,346 + Xcc-8004.2082.1 0.87 +1.5
1,997,347 - Xcc-8004.2082.1 0.87 -0.3
1,997,347 - Xcc-8004.2082.1 0.87 -2.1
1,997,364 - Xcc-8004.2082.1 0.88 -3.4
1,997,436 + -0.7
1,997,437 - -0.8
1,997,448 + +2.2
1,997,448 + +1.5
1,997,448 + -1.0
1,997,448 + +1.5
1,997,448 + +1.1
1,997,449 - +0.6
1,997,530 - -0.5

Or see this region's nucleotide sequence