Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1896.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1894.1 and Xcc-8004.1895.1 are separated by 7 nucleotidesXcc-8004.1895.1 and Xcc-8004.1896.1 are separated by 21 nucleotidesXcc-8004.1896.1 and Xcc-8004.1897.1 are separated by 35 nucleotidesXcc-8004.1897.1 and Xcc-8004.1898.1 are separated by 59 nucleotides Xcc-8004.1894.1: Xcc-8004.1894.1 - Proton/glutamate symport protein @ Sodium/glutamate symport protein, at 1,829,491 to 1,830,831 Xcc-8004.1894.1 Xcc-8004.1895.1: Xcc-8004.1895.1 - FIG01210044: hypothetical protein, at 1,830,839 to 1,831,657 Xcc-8004.1895.1 Xcc-8004.1896.1: Xcc-8004.1896.1 - putative; ORF located using Glimmer/Genemark, at 1,831,679 to 1,832,434 Xcc-8004.1896.1 Xcc-8004.1897.1: Xcc-8004.1897.1 - Acyl-CoA thioester hydrolase, at 1,832,470 to 1,832,988 Xcc-8004.1897.1 Xcc-8004.1898.1: Xcc-8004.1898.1 - Mobile element protein, at 1,833,048 to 1,834,472 Xcc-8004.1898.1 Position (kb) 1831 1832 1833Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1830.764 kb on - strandat 1830.764 kb on - strandat 1830.764 kb on - strandat 1830.953 kb on + strand, within Xcc-8004.1895.1at 1830.954 kb on - strand, within Xcc-8004.1895.1at 1830.954 kb on - strand, within Xcc-8004.1895.1at 1830.954 kb on - strand, within Xcc-8004.1895.1at 1830.954 kb on - strand, within Xcc-8004.1895.1at 1830.987 kb on - strand, within Xcc-8004.1895.1at 1831.040 kb on - strand, within Xcc-8004.1895.1at 1831.040 kb on - strand, within Xcc-8004.1895.1at 1831.092 kb on + strand, within Xcc-8004.1895.1at 1831.093 kb on - strand, within Xcc-8004.1895.1at 1831.093 kb on - strand, within Xcc-8004.1895.1at 1831.093 kb on - strand, within Xcc-8004.1895.1at 1831.093 kb on - strand, within Xcc-8004.1895.1at 1831.302 kb on + strand, within Xcc-8004.1895.1at 1831.302 kb on + strand, within Xcc-8004.1895.1at 1831.302 kb on + strand, within Xcc-8004.1895.1at 1831.303 kb on - strand, within Xcc-8004.1895.1at 1831.303 kb on - strand, within Xcc-8004.1895.1at 1831.337 kb on + strand, within Xcc-8004.1895.1at 1831.338 kb on - strand, within Xcc-8004.1895.1at 1831.338 kb on - strand, within Xcc-8004.1895.1at 1831.338 kb on - strand, within Xcc-8004.1895.1at 1831.425 kb on - strand, within Xcc-8004.1895.1at 1831.425 kb on - strand, within Xcc-8004.1895.1at 1831.472 kb on + strand, within Xcc-8004.1895.1at 1831.472 kb on + strand, within Xcc-8004.1895.1at 1831.473 kb on - strand, within Xcc-8004.1895.1at 1831.511 kb on + strand, within Xcc-8004.1895.1at 1831.512 kb on - strand, within Xcc-8004.1895.1at 1831.512 kb on - strand, within Xcc-8004.1895.1at 1831.512 kb on - strand, within Xcc-8004.1895.1at 1831.526 kb on + strand, within Xcc-8004.1895.1at 1831.526 kb on + strand, within Xcc-8004.1895.1at 1831.526 kb on + strand, within Xcc-8004.1895.1at 1831.527 kb on - strand, within Xcc-8004.1895.1at 1832.009 kb on + strand, within Xcc-8004.1896.1at 1832.009 kb on + strand, within Xcc-8004.1896.1at 1832.010 kb on - strand, within Xcc-8004.1896.1at 1832.157 kb on + strand, within Xcc-8004.1896.1at 1832.158 kb on - strand, within Xcc-8004.1896.1at 1832.205 kb on - strand, within Xcc-8004.1896.1at 1832.220 kb on + strand, within Xcc-8004.1896.1at 1832.221 kb on - strand, within Xcc-8004.1896.1at 1832.457 kb on + strandat 1832.458 kb on - strandat 1832.620 kb on + strand, within Xcc-8004.1897.1at 1832.620 kb on + strand, within Xcc-8004.1897.1at 1832.621 kb on - strand, within Xcc-8004.1897.1at 1832.621 kb on - strand, within Xcc-8004.1897.1at 1832.624 kb on + strand, within Xcc-8004.1897.1at 1832.625 kb on - strand, within Xcc-8004.1897.1at 1832.899 kb on + strand, within Xcc-8004.1897.1at 1832.899 kb on + strand, within Xcc-8004.1897.1at 1832.899 kb on + strand, within Xcc-8004.1897.1at 1832.899 kb on + strand, within Xcc-8004.1897.1at 1832.900 kb on - strand, within Xcc-8004.1897.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,830,764 - -0.5
1,830,764 - -0.5
1,830,764 - +1.7
1,830,953 + Xcc-8004.1895.1 0.14 -0.2
1,830,954 - Xcc-8004.1895.1 0.14 +0.5
1,830,954 - Xcc-8004.1895.1 0.14 -1.0
1,830,954 - Xcc-8004.1895.1 0.14 -1.6
1,830,954 - Xcc-8004.1895.1 0.14 -0.6
1,830,987 - Xcc-8004.1895.1 0.18 -0.5
1,831,040 - Xcc-8004.1895.1 0.25 +0.8
1,831,040 - Xcc-8004.1895.1 0.25 +0.8
1,831,092 + Xcc-8004.1895.1 0.31 -0.3
1,831,093 - Xcc-8004.1895.1 0.31 -0.9
1,831,093 - Xcc-8004.1895.1 0.31 -1.0
1,831,093 - Xcc-8004.1895.1 0.31 -2.0
1,831,093 - Xcc-8004.1895.1 0.31 -0.5
1,831,302 + Xcc-8004.1895.1 0.57 +0.3
1,831,302 + Xcc-8004.1895.1 0.57 +0.7
1,831,302 + Xcc-8004.1895.1 0.57 +0.8
1,831,303 - Xcc-8004.1895.1 0.57 +4.5
1,831,303 - Xcc-8004.1895.1 0.57 +0.3
1,831,337 + Xcc-8004.1895.1 0.61 -0.3
1,831,338 - Xcc-8004.1895.1 0.61 -2.4
1,831,338 - Xcc-8004.1895.1 0.61 +0.3
1,831,338 - Xcc-8004.1895.1 0.61 -2.4
1,831,425 - Xcc-8004.1895.1 0.72 -2.6
1,831,425 - Xcc-8004.1895.1 0.72 -0.5
1,831,472 + Xcc-8004.1895.1 0.77 -0.8
1,831,472 + Xcc-8004.1895.1 0.77 +0.2
1,831,473 - Xcc-8004.1895.1 0.77 -1.6
1,831,511 + Xcc-8004.1895.1 0.82 +1.2
1,831,512 - Xcc-8004.1895.1 0.82 +1.1
1,831,512 - Xcc-8004.1895.1 0.82 +2.0
1,831,512 - Xcc-8004.1895.1 0.82 -0.1
1,831,526 + Xcc-8004.1895.1 0.84 +1.0
1,831,526 + Xcc-8004.1895.1 0.84 +2.6
1,831,526 + Xcc-8004.1895.1 0.84 -3.0
1,831,527 - Xcc-8004.1895.1 0.84 -0.1
1,832,009 + Xcc-8004.1896.1 0.44 +0.8
1,832,009 + Xcc-8004.1896.1 0.44 +0.6
1,832,010 - Xcc-8004.1896.1 0.44 -0.5
1,832,157 + Xcc-8004.1896.1 0.63 -3.6
1,832,158 - Xcc-8004.1896.1 0.63 +1.2
1,832,205 - Xcc-8004.1896.1 0.70 +1.0
1,832,220 + Xcc-8004.1896.1 0.72 +2.7
1,832,221 - Xcc-8004.1896.1 0.72 -0.4
1,832,457 + -0.7
1,832,458 - -1.0
1,832,620 + Xcc-8004.1897.1 0.29 -1.5
1,832,620 + Xcc-8004.1897.1 0.29 -0.5
1,832,621 - Xcc-8004.1897.1 0.29 +0.4
1,832,621 - Xcc-8004.1897.1 0.29 -0.2
1,832,624 + Xcc-8004.1897.1 0.30 +4.3
1,832,625 - Xcc-8004.1897.1 0.30 -2.2
1,832,899 + Xcc-8004.1897.1 0.83 +0.7
1,832,899 + Xcc-8004.1897.1 0.83 -0.1
1,832,899 + Xcc-8004.1897.1 0.83 -0.9
1,832,899 + Xcc-8004.1897.1 0.83 -0.5
1,832,900 - Xcc-8004.1897.1 0.83 -0.3

Or see this region's nucleotide sequence