Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1842.1 and Xcc-8004.1843.1 overlap by 55 nucleotides Xcc-8004.1843.1 and Xcc-8004.1844.1 are separated by 69 nucleotides Xcc-8004.1844.1 and Xcc-8004.1845.1 overlap by 115 nucleotides
Xcc-8004.1842.1: Xcc-8004.1842.1 - Mlr3171 protein, at 1,775,828 to 1,778,194
Xcc-8004.1842.1
Xcc-8004.1843.1: Xcc-8004.1843.1 - Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70), at 1,778,140 to 1,778,973
Xcc-8004.1843.1
Xcc-8004.1844.1: Xcc-8004.1844.1 - Mobile element protein, at 1,779,043 to 1,779,180
Xcc-8004.1844.1
Xcc-8004.1845.1: Xcc-8004.1845.1 - Mobile element protein, at 1,779,066 to 1,781,783
Xcc-8004.1845.1
Position (kb) 1778
1779 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1777.475 kb on + strand, within Xcc-8004.1842.1 at 1777.476 kb on - strand, within Xcc-8004.1842.1 at 1777.521 kb on - strand, within Xcc-8004.1842.1 at 1777.521 kb on - strand, within Xcc-8004.1842.1 at 1777.521 kb on - strand, within Xcc-8004.1842.1 at 1777.521 kb on - strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.698 kb on + strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.699 kb on - strand, within Xcc-8004.1842.1 at 1777.920 kb on - strand, within Xcc-8004.1842.1 at 1777.934 kb on - strand, within Xcc-8004.1842.1 at 1777.977 kb on - strand at 1777.977 kb on - strand at 1778.025 kb on + strand at 1778.025 kb on + strand at 1778.026 kb on - strand at 1778.026 kb on - strand at 1778.026 kb on - strand at 1778.026 kb on - strand at 1778.125 kb on + strand at 1778.126 kb on - strand at 1778.126 kb on - strand at 1778.126 kb on - strand at 1778.275 kb on - strand, within Xcc-8004.1843.1 at 1778.443 kb on - strand, within Xcc-8004.1843.1 at 1778.443 kb on - strand, within Xcc-8004.1843.1 at 1778.458 kb on + strand, within Xcc-8004.1843.1 at 1778.458 kb on + strand, within Xcc-8004.1843.1 at 1778.458 kb on + strand, within Xcc-8004.1843.1 at 1778.459 kb on - strand, within Xcc-8004.1843.1 at 1778.459 kb on - strand, within Xcc-8004.1843.1 at 1778.459 kb on - strand, within Xcc-8004.1843.1 at 1778.459 kb on - strand, within Xcc-8004.1843.1 at 1778.459 kb on - strand, within Xcc-8004.1843.1 at 1778.662 kb on + strand, within Xcc-8004.1843.1 at 1778.662 kb on + strand, within Xcc-8004.1843.1 at 1778.663 kb on - strand, within Xcc-8004.1843.1 at 1778.663 kb on - strand, within Xcc-8004.1843.1 at 1778.758 kb on - strand, within Xcc-8004.1843.1 at 1778.961 kb on + strand at 1778.961 kb on + strand at 1778.962 kb on - strand at 1778.962 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,777,475 + Xcc-8004.1842.1 0.70 -1.0 1,777,476 - Xcc-8004.1842.1 0.70 -1.3 1,777,521 - Xcc-8004.1842.1 0.72 -1.6 1,777,521 - Xcc-8004.1842.1 0.72 +0.2 1,777,521 - Xcc-8004.1842.1 0.72 -1.6 1,777,521 - Xcc-8004.1842.1 0.72 -0.4 1,777,698 + Xcc-8004.1842.1 0.79 +0.6 1,777,698 + Xcc-8004.1842.1 0.79 -0.8 1,777,698 + Xcc-8004.1842.1 0.79 -2.4 1,777,698 + Xcc-8004.1842.1 0.79 +1.1 1,777,698 + Xcc-8004.1842.1 0.79 +1.0 1,777,698 + Xcc-8004.1842.1 0.79 -2.0 1,777,698 + Xcc-8004.1842.1 0.79 -0.4 1,777,698 + Xcc-8004.1842.1 0.79 +0.2 1,777,698 + Xcc-8004.1842.1 0.79 +0.6 1,777,698 + Xcc-8004.1842.1 0.79 -0.2 1,777,698 + Xcc-8004.1842.1 0.79 -1.7 1,777,698 + Xcc-8004.1842.1 0.79 -1.0 1,777,698 + Xcc-8004.1842.1 0.79 -1.9 1,777,699 - Xcc-8004.1842.1 0.79 +1.5 1,777,699 - Xcc-8004.1842.1 0.79 +0.9 1,777,699 - Xcc-8004.1842.1 0.79 -0.8 1,777,699 - Xcc-8004.1842.1 0.79 +0.5 1,777,699 - Xcc-8004.1842.1 0.79 +1.3 1,777,699 - Xcc-8004.1842.1 0.79 -0.9 1,777,699 - Xcc-8004.1842.1 0.79 +1.4 1,777,699 - Xcc-8004.1842.1 0.79 -0.1 1,777,699 - Xcc-8004.1842.1 0.79 +1.5 1,777,920 - Xcc-8004.1842.1 0.88 -0.8 1,777,934 - Xcc-8004.1842.1 0.89 -0.1 1,777,977 - +1.3 1,777,977 - -2.2 1,778,025 + +1.5 1,778,025 + +1.5 1,778,026 - -2.9 1,778,026 - -1.1 1,778,026 - -1.1 1,778,026 - +1.8 1,778,125 + +0.0 1,778,126 - +0.3 1,778,126 - +0.2 1,778,126 - +0.5 1,778,275 - Xcc-8004.1843.1 0.16 -2.9 1,778,443 - Xcc-8004.1843.1 0.36 +1.0 1,778,443 - Xcc-8004.1843.1 0.36 +0.7 1,778,458 + Xcc-8004.1843.1 0.38 +0.9 1,778,458 + Xcc-8004.1843.1 0.38 -1.5 1,778,458 + Xcc-8004.1843.1 0.38 +0.9 1,778,459 - Xcc-8004.1843.1 0.38 +1.0 1,778,459 - Xcc-8004.1843.1 0.38 -0.4 1,778,459 - Xcc-8004.1843.1 0.38 +0.5 1,778,459 - Xcc-8004.1843.1 0.38 -1.1 1,778,459 - Xcc-8004.1843.1 0.38 +2.1 1,778,662 + Xcc-8004.1843.1 0.63 +0.5 1,778,662 + Xcc-8004.1843.1 0.63 -1.0 1,778,663 - Xcc-8004.1843.1 0.63 -0.7 1,778,663 - Xcc-8004.1843.1 0.63 -0.3 1,778,758 - Xcc-8004.1843.1 0.74 +0.4 1,778,961 + -1.3 1,778,961 + +1.5 1,778,962 - +1.5 1,778,962 - -1.2
Or see this region's nucleotide sequence