Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1821.1 and Xcc-8004.1822.1 overlap by 4 nucleotides Xcc-8004.1822.1 and Xcc-8004.1823.1 are separated by 119 nucleotides Xcc-8004.1823.1 and Xcc-8004.1824.1 are separated by 64 nucleotides
Xcc-8004.1821.1: Xcc-8004.1821.1 - Transmembrane transport protein, at 1,757,156 to 1,758,385
Xcc-8004.1821.1
Xcc-8004.1822.1: Xcc-8004.1822.1 - Transcriptional regulator, MarR family, at 1,758,382 to 1,758,804
Xcc-8004.1822.1
Xcc-8004.1823.1: Xcc-8004.1823.1 - hypothetical protein, at 1,758,924 to 1,759,100
Xcc-8004.1823.1
Xcc-8004.1824.1: Xcc-8004.1824.1 - Zinc-regulated outer membrane receptor, at 1,759,165 to 1,761,231
Xcc-8004.1824.1
Position (kb) 1758
1759 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1757.446 kb on - strand, within Xcc-8004.1821.1 at 1757.461 kb on + strand, within Xcc-8004.1821.1 at 1757.462 kb on - strand, within Xcc-8004.1821.1 at 1757.478 kb on + strand, within Xcc-8004.1821.1 at 1757.479 kb on - strand, within Xcc-8004.1821.1 at 1757.479 kb on - strand, within Xcc-8004.1821.1 at 1757.508 kb on + strand, within Xcc-8004.1821.1 at 1757.508 kb on + strand, within Xcc-8004.1821.1 at 1757.508 kb on + strand, within Xcc-8004.1821.1 at 1757.509 kb on - strand, within Xcc-8004.1821.1 at 1757.509 kb on - strand, within Xcc-8004.1821.1 at 1757.509 kb on - strand, within Xcc-8004.1821.1 at 1757.718 kb on + strand, within Xcc-8004.1821.1 at 1757.718 kb on + strand, within Xcc-8004.1821.1 at 1757.718 kb on + strand, within Xcc-8004.1821.1 at 1757.719 kb on - strand, within Xcc-8004.1821.1 at 1757.719 kb on - strand, within Xcc-8004.1821.1 at 1758.655 kb on - strand, within Xcc-8004.1822.1 at 1758.695 kb on + strand, within Xcc-8004.1822.1 at 1758.695 kb on + strand, within Xcc-8004.1822.1 at 1758.737 kb on + strand, within Xcc-8004.1822.1 at 1758.737 kb on + strand, within Xcc-8004.1822.1 at 1758.738 kb on - strand, within Xcc-8004.1822.1 at 1758.841 kb on + strand at 1758.850 kb on - strand at 1759.044 kb on - strand, within Xcc-8004.1823.1 at 1759.316 kb on + strand at 1759.317 kb on - strand at 1759.317 kb on - strand at 1759.344 kb on - strand at 1759.674 kb on + strand, within Xcc-8004.1824.1 at 1759.675 kb on - strand, within Xcc-8004.1824.1 at 1759.676 kb on + strand, within Xcc-8004.1824.1 at 1759.676 kb on + strand, within Xcc-8004.1824.1 at 1759.676 kb on + strand, within Xcc-8004.1824.1 at 1759.677 kb on - strand, within Xcc-8004.1824.1 at 1759.691 kb on + strand, within Xcc-8004.1824.1 at 1759.692 kb on - strand, within Xcc-8004.1824.1 at 1759.700 kb on + strand, within Xcc-8004.1824.1 at 1759.700 kb on + strand, within Xcc-8004.1824.1 at 1759.700 kb on + strand, within Xcc-8004.1824.1 at 1759.701 kb on - strand, within Xcc-8004.1824.1 at 1759.703 kb on + strand, within Xcc-8004.1824.1 at 1759.704 kb on - strand, within Xcc-8004.1824.1 at 1759.704 kb on - strand, within Xcc-8004.1824.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,757,446 - Xcc-8004.1821.1 0.24 -0.7 1,757,461 + Xcc-8004.1821.1 0.25 -0.6 1,757,462 - Xcc-8004.1821.1 0.25 -1.4 1,757,478 + Xcc-8004.1821.1 0.26 -1.7 1,757,479 - Xcc-8004.1821.1 0.26 +0.2 1,757,479 - Xcc-8004.1821.1 0.26 -0.1 1,757,508 + Xcc-8004.1821.1 0.29 +1.4 1,757,508 + Xcc-8004.1821.1 0.29 +1.7 1,757,508 + Xcc-8004.1821.1 0.29 -0.4 1,757,509 - Xcc-8004.1821.1 0.29 +0.2 1,757,509 - Xcc-8004.1821.1 0.29 -0.9 1,757,509 - Xcc-8004.1821.1 0.29 +0.9 1,757,718 + Xcc-8004.1821.1 0.46 +0.1 1,757,718 + Xcc-8004.1821.1 0.46 +1.1 1,757,718 + Xcc-8004.1821.1 0.46 -0.4 1,757,719 - Xcc-8004.1821.1 0.46 -0.0 1,757,719 - Xcc-8004.1821.1 0.46 +0.5 1,758,655 - Xcc-8004.1822.1 0.65 +0.8 1,758,695 + Xcc-8004.1822.1 0.74 +1.2 1,758,695 + Xcc-8004.1822.1 0.74 +0.7 1,758,737 + Xcc-8004.1822.1 0.84 +1.8 1,758,737 + Xcc-8004.1822.1 0.84 +0.3 1,758,738 - Xcc-8004.1822.1 0.84 +3.8 1,758,841 + -0.2 1,758,850 - -1.8 1,759,044 - Xcc-8004.1823.1 0.68 -0.3 1,759,316 + -0.0 1,759,317 - +0.6 1,759,317 - -0.2 1,759,344 - +0.6 1,759,674 + Xcc-8004.1824.1 0.25 -1.0 1,759,675 - Xcc-8004.1824.1 0.25 -0.2 1,759,676 + Xcc-8004.1824.1 0.25 -0.4 1,759,676 + Xcc-8004.1824.1 0.25 -0.5 1,759,676 + Xcc-8004.1824.1 0.25 -0.7 1,759,677 - Xcc-8004.1824.1 0.25 +0.1 1,759,691 + Xcc-8004.1824.1 0.25 -1.0 1,759,692 - Xcc-8004.1824.1 0.25 -0.1 1,759,700 + Xcc-8004.1824.1 0.26 +1.2 1,759,700 + Xcc-8004.1824.1 0.26 -2.0 1,759,700 + Xcc-8004.1824.1 0.26 +2.1 1,759,701 - Xcc-8004.1824.1 0.26 -0.7 1,759,703 + Xcc-8004.1824.1 0.26 -0.7 1,759,704 - Xcc-8004.1824.1 0.26 -0.3 1,759,704 - Xcc-8004.1824.1 0.26 -0.3
Or see this region's nucleotide sequence