Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1687.1 and Xcc-8004.1688.1 overlap by 4 nucleotides Xcc-8004.1688.1 and Xcc-8004.1689.1 are separated by 218 nucleotides
Xcc-8004.1687.1: Xcc-8004.1687.1 - probable oxidoreductase, at 1,620,152 to 1,621,756
Xcc-8004.1687.1
Xcc-8004.1688.1: Xcc-8004.1688.1 - Thiamin biosynthesis lipoprotein ApbE, at 1,621,753 to 1,622,727
Xcc-8004.1688.1
Xcc-8004.1689.1: Xcc-8004.1689.1 - Nikel transport family protein NikM, at 1,622,946 to 1,623,749
Xcc-8004.1689.1
Position (kb) 1621
1622
1623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 1620.773 kb on + strand, within Xcc-8004.1687.1 at 1620.996 kb on + strand, within Xcc-8004.1687.1 at 1620.996 kb on + strand, within Xcc-8004.1687.1 at 1621.027 kb on + strand, within Xcc-8004.1687.1 at 1621.027 kb on + strand, within Xcc-8004.1687.1 at 1621.059 kb on + strand, within Xcc-8004.1687.1 at 1621.060 kb on - strand, within Xcc-8004.1687.1 at 1621.331 kb on + strand, within Xcc-8004.1687.1 at 1621.331 kb on + strand, within Xcc-8004.1687.1 at 1621.331 kb on + strand, within Xcc-8004.1687.1 at 1621.331 kb on + strand, within Xcc-8004.1687.1 at 1621.332 kb on - strand, within Xcc-8004.1687.1 at 1621.332 kb on - strand, within Xcc-8004.1687.1 at 1621.332 kb on - strand, within Xcc-8004.1687.1 at 1621.332 kb on - strand, within Xcc-8004.1687.1 at 1621.600 kb on - strand at 1621.857 kb on - strand, within Xcc-8004.1688.1 at 1621.990 kb on - strand, within Xcc-8004.1688.1 at 1621.990 kb on - strand, within Xcc-8004.1688.1 at 1621.998 kb on - strand, within Xcc-8004.1688.1 at 1622.002 kb on + strand, within Xcc-8004.1688.1 at 1622.003 kb on - strand, within Xcc-8004.1688.1 at 1622.003 kb on - strand, within Xcc-8004.1688.1 at 1622.410 kb on + strand, within Xcc-8004.1688.1 at 1622.410 kb on + strand, within Xcc-8004.1688.1 at 1622.410 kb on + strand, within Xcc-8004.1688.1 at 1622.411 kb on - strand, within Xcc-8004.1688.1 at 1622.411 kb on - strand, within Xcc-8004.1688.1 at 1622.411 kb on - strand, within Xcc-8004.1688.1 at 1622.867 kb on + strand at 1622.868 kb on - strand at 1622.948 kb on - strand at 1622.978 kb on - strand at 1622.978 kb on - strand at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.046 kb on + strand, within Xcc-8004.1689.1 at 1623.047 kb on - strand, within Xcc-8004.1689.1 at 1623.047 kb on - strand, within Xcc-8004.1689.1 at 1623.047 kb on - strand, within Xcc-8004.1689.1 at 1623.047 kb on - strand, within Xcc-8004.1689.1 at 1623.463 kb on + strand, within Xcc-8004.1689.1 at 1623.463 kb on + strand, within Xcc-8004.1689.1 at 1623.464 kb on - strand, within Xcc-8004.1689.1 at 1623.464 kb on - strand, within Xcc-8004.1689.1 at 1623.464 kb on - strand, within Xcc-8004.1689.1 at 1623.505 kb on + strand, within Xcc-8004.1689.1 at 1623.505 kb on + strand, within Xcc-8004.1689.1 at 1623.505 kb on + strand, within Xcc-8004.1689.1 at 1623.506 kb on - strand, within Xcc-8004.1689.1 at 1623.599 kb on - strand, within Xcc-8004.1689.1 at 1623.599 kb on - strand, within Xcc-8004.1689.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,620,773 + Xcc-8004.1687.1 0.39 -0.3 1,620,996 + Xcc-8004.1687.1 0.53 +1.6 1,620,996 + Xcc-8004.1687.1 0.53 +0.5 1,621,027 + Xcc-8004.1687.1 0.55 -0.3 1,621,027 + Xcc-8004.1687.1 0.55 +0.2 1,621,059 + Xcc-8004.1687.1 0.57 +0.9 1,621,060 - Xcc-8004.1687.1 0.57 -2.5 1,621,331 + Xcc-8004.1687.1 0.73 -1.8 1,621,331 + Xcc-8004.1687.1 0.73 -2.0 1,621,331 + Xcc-8004.1687.1 0.73 -0.8 1,621,331 + Xcc-8004.1687.1 0.73 -1.4 1,621,332 - Xcc-8004.1687.1 0.74 +1.3 1,621,332 - Xcc-8004.1687.1 0.74 +0.7 1,621,332 - Xcc-8004.1687.1 0.74 -0.2 1,621,332 - Xcc-8004.1687.1 0.74 -2.0 1,621,600 - -3.3 1,621,857 - Xcc-8004.1688.1 0.11 -0.4 1,621,990 - Xcc-8004.1688.1 0.24 -0.4 1,621,990 - Xcc-8004.1688.1 0.24 -0.9 1,621,998 - Xcc-8004.1688.1 0.25 +7.0 1,622,002 + Xcc-8004.1688.1 0.26 +0.7 1,622,003 - Xcc-8004.1688.1 0.26 +0.4 1,622,003 - Xcc-8004.1688.1 0.26 -2.4 1,622,410 + Xcc-8004.1688.1 0.67 +0.8 1,622,410 + Xcc-8004.1688.1 0.67 -1.5 1,622,410 + Xcc-8004.1688.1 0.67 +0.6 1,622,411 - Xcc-8004.1688.1 0.67 +1.6 1,622,411 - Xcc-8004.1688.1 0.67 +1.5 1,622,411 - Xcc-8004.1688.1 0.67 +1.9 1,622,867 + -1.0 1,622,868 - +1.8 1,622,948 - +0.3 1,622,978 - -1.8 1,622,978 - +0.2 1,623,046 + Xcc-8004.1689.1 0.12 +2.3 1,623,046 + Xcc-8004.1689.1 0.12 +1.1 1,623,046 + Xcc-8004.1689.1 0.12 +0.9 1,623,046 + Xcc-8004.1689.1 0.12 -0.9 1,623,046 + Xcc-8004.1689.1 0.12 -2.4 1,623,046 + Xcc-8004.1689.1 0.12 +0.6 1,623,047 - Xcc-8004.1689.1 0.13 +1.2 1,623,047 - Xcc-8004.1689.1 0.13 -1.0 1,623,047 - Xcc-8004.1689.1 0.13 -1.4 1,623,047 - Xcc-8004.1689.1 0.13 -1.4 1,623,463 + Xcc-8004.1689.1 0.64 -0.2 1,623,463 + Xcc-8004.1689.1 0.64 +0.1 1,623,464 - Xcc-8004.1689.1 0.64 -0.3 1,623,464 - Xcc-8004.1689.1 0.64 -1.0 1,623,464 - Xcc-8004.1689.1 0.64 -1.3 1,623,505 + Xcc-8004.1689.1 0.70 +1.6 1,623,505 + Xcc-8004.1689.1 0.70 -0.9 1,623,505 + Xcc-8004.1689.1 0.70 +0.7 1,623,506 - Xcc-8004.1689.1 0.70 -1.9 1,623,599 - Xcc-8004.1689.1 0.81 +1.2 1,623,599 - Xcc-8004.1689.1 0.81 -0.8
Or see this region's nucleotide sequence