Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1402.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1400.1 and Xcc-8004.1401.1 are separated by 19 nucleotidesXcc-8004.1401.1 and Xcc-8004.1402.1 overlap by 79 nucleotidesXcc-8004.1402.1 and Xcc-8004.1403.1 overlap by 4 nucleotides Xcc-8004.1400.1: Xcc-8004.1400.1 - Cobalamin synthase (EC 2.7.8.26), at 1,327,994 to 1,328,728 Xcc-8004.1400.1 Xcc-8004.1401.1: Xcc-8004.1401.1 - hypothetical protein, at 1,328,748 to 1,329,728 Xcc-8004.1401.1 Xcc-8004.1402.1: Xcc-8004.1402.1 - Vibrioferrin decarboxylase protein PvsE, at 1,329,650 to 1,330,933 Xcc-8004.1402.1 Xcc-8004.1403.1: Xcc-8004.1403.1 - Vibrioferrin amide bond forming protein PvsD @ Siderophore synthetase superfamily, group A, at 1,330,930 to 1,332,699 Xcc-8004.1403.1 Position (kb) 1329 1330 1331Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.717 kb on + strandat 1328.718 kb on - strandat 1328.727 kb on - strandat 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.094 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.111 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.558 kb on + strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.559 kb on - strand, within Xcc-8004.1401.1at 1329.645 kb on + strandat 1329.645 kb on + strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.646 kb on - strandat 1329.652 kb on - strandat 1329.652 kb on - strandat 1329.790 kb on + strand, within Xcc-8004.1402.1at 1329.791 kb on - strand, within Xcc-8004.1402.1at 1329.791 kb on - strand, within Xcc-8004.1402.1at 1329.801 kb on + strand, within Xcc-8004.1402.1at 1329.802 kb on - strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.872 kb on + strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1329.873 kb on - strand, within Xcc-8004.1402.1at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.068 kb on + strand, within Xcc-8004.1402.1at 1330.092 kb on + strand, within Xcc-8004.1402.1at 1330.093 kb on - strand, within Xcc-8004.1402.1at 1330.200 kb on + strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.201 kb on - strand, within Xcc-8004.1402.1at 1330.284 kb on + strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.285 kb on - strand, within Xcc-8004.1402.1at 1330.380 kb on - strand, within Xcc-8004.1402.1at 1330.723 kb on - strand, within Xcc-8004.1402.1at 1330.845 kb on + strandat 1330.851 kb on + strandat 1330.851 kb on + strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.852 kb on - strandat 1330.859 kb on + strandat 1330.859 kb on + strandat 1330.860 kb on - strandat 1330.883 kb on + strandat 1330.883 kb on + strandat 1330.883 kb on + strandat 1330.884 kb on - strandat 1330.988 kb on + strandat 1330.989 kb on - strandat 1331.197 kb on - strand, within Xcc-8004.1403.1at 1331.213 kb on + strand, within Xcc-8004.1403.1at 1331.214 kb on - strand, within Xcc-8004.1403.1at 1331.246 kb on + strand, within Xcc-8004.1403.1at 1331.246 kb on + strand, within Xcc-8004.1403.1at 1331.247 kb on - strand, within Xcc-8004.1403.1at 1331.249 kb on + strand, within Xcc-8004.1403.1at 1331.460 kb on - strand, within Xcc-8004.1403.1at 1331.460 kb on - strand, within Xcc-8004.1403.1at 1331.579 kb on - strand, within Xcc-8004.1403.1at 1331.627 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.822 kb on + strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.823 kb on - strand, within Xcc-8004.1403.1at 1331.863 kb on + strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.864 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.883 kb on - strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.900 kb on + strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1at 1331.901 kb on - strand, within Xcc-8004.1403.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,328,717 + +0.1
1,328,717 + -1.5
1,328,717 + +1.5
1,328,717 + -0.3
1,328,718 - +1.3
1,328,727 - -1.4
1,329,094 + Xcc-8004.1401.1 0.35 -1.5
1,329,094 + Xcc-8004.1401.1 0.35 -0.1
1,329,111 + Xcc-8004.1401.1 0.37 +2.9
1,329,111 + Xcc-8004.1401.1 0.37 +1.0
1,329,558 + Xcc-8004.1401.1 0.83 -1.2
1,329,558 + Xcc-8004.1401.1 0.83 -0.7
1,329,559 - Xcc-8004.1401.1 0.83 +0.5
1,329,559 - Xcc-8004.1401.1 0.83 -1.5
1,329,559 - Xcc-8004.1401.1 0.83 +0.5
1,329,645 + +0.3
1,329,645 + +0.4
1,329,646 - +1.3
1,329,646 - +1.5
1,329,646 - -1.0
1,329,652 - -1.5
1,329,652 - -0.7
1,329,790 + Xcc-8004.1402.1 0.11 +0.1
1,329,791 - Xcc-8004.1402.1 0.11 -0.5
1,329,791 - Xcc-8004.1402.1 0.11 -0.4
1,329,801 + Xcc-8004.1402.1 0.12 -0.3
1,329,802 - Xcc-8004.1402.1 0.12 -2.2
1,329,872 + Xcc-8004.1402.1 0.17 +2.0
1,329,872 + Xcc-8004.1402.1 0.17 -0.3
1,329,872 + Xcc-8004.1402.1 0.17 -0.8
1,329,872 + Xcc-8004.1402.1 0.17 -2.5
1,329,872 + Xcc-8004.1402.1 0.17 +0.2
1,329,873 - Xcc-8004.1402.1 0.17 +2.5
1,329,873 - Xcc-8004.1402.1 0.17 +0.5
1,329,873 - Xcc-8004.1402.1 0.17 +1.0
1,329,873 - Xcc-8004.1402.1 0.17 +0.3
1,329,873 - Xcc-8004.1402.1 0.17 +1.2
1,330,068 + Xcc-8004.1402.1 0.33 -0.7
1,330,068 + Xcc-8004.1402.1 0.33 -1.9
1,330,092 + Xcc-8004.1402.1 0.34 +0.5
1,330,093 - Xcc-8004.1402.1 0.35 -1.4
1,330,200 + Xcc-8004.1402.1 0.43 -2.4
1,330,201 - Xcc-8004.1402.1 0.43 +0.3
1,330,201 - Xcc-8004.1402.1 0.43 +1.0
1,330,284 + Xcc-8004.1402.1 0.49 -2.2
1,330,285 - Xcc-8004.1402.1 0.49 -1.0
1,330,285 - Xcc-8004.1402.1 0.49 -3.2
1,330,380 - Xcc-8004.1402.1 0.57 -2.2
1,330,723 - Xcc-8004.1402.1 0.84 +0.2
1,330,845 + -1.6
1,330,851 + -1.1
1,330,851 + -2.0
1,330,852 - -2.6
1,330,852 - -0.8
1,330,852 - +0.1
1,330,852 - +2.5
1,330,852 - +0.0
1,330,859 + -2.8
1,330,859 + -1.7
1,330,860 - -0.7
1,330,883 + -0.9
1,330,883 + +1.3
1,330,883 + -0.2
1,330,884 - -0.8
1,330,988 + +0.3
1,330,989 - -1.6
1,331,197 - Xcc-8004.1403.1 0.15 +0.9
1,331,213 + Xcc-8004.1403.1 0.16 -0.9
1,331,214 - Xcc-8004.1403.1 0.16 +0.3
1,331,246 + Xcc-8004.1403.1 0.18 +0.5
1,331,246 + Xcc-8004.1403.1 0.18 -0.8
1,331,247 - Xcc-8004.1403.1 0.18 +0.7
1,331,249 + Xcc-8004.1403.1 0.18 +1.2
1,331,460 - Xcc-8004.1403.1 0.30 +1.0
1,331,460 - Xcc-8004.1403.1 0.30 +0.2
1,331,579 - Xcc-8004.1403.1 0.37 -1.3
1,331,627 + Xcc-8004.1403.1 0.39 +0.2
1,331,822 + Xcc-8004.1403.1 0.50 -1.0
1,331,822 + Xcc-8004.1403.1 0.50 +2.0
1,331,822 + Xcc-8004.1403.1 0.50 -0.9
1,331,823 - Xcc-8004.1403.1 0.50 -0.6
1,331,823 - Xcc-8004.1403.1 0.50 -0.2
1,331,863 + Xcc-8004.1403.1 0.53 +0.2
1,331,864 - Xcc-8004.1403.1 0.53 -1.5
1,331,864 - Xcc-8004.1403.1 0.53 +2.1
1,331,864 - Xcc-8004.1403.1 0.53 -0.4
1,331,864 - Xcc-8004.1403.1 0.53 -0.0
1,331,883 - Xcc-8004.1403.1 0.54 +1.3
1,331,883 - Xcc-8004.1403.1 0.54 +0.5
1,331,900 + Xcc-8004.1403.1 0.55 -1.5
1,331,900 + Xcc-8004.1403.1 0.55 +1.0
1,331,900 + Xcc-8004.1403.1 0.55 +0.5
1,331,901 - Xcc-8004.1403.1 0.55 -0.2
1,331,901 - Xcc-8004.1403.1 0.55 +1.0

Or see this region's nucleotide sequence