Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1223.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1221.1 and Xcc-8004.1222.1 overlap by 4 nucleotidesXcc-8004.1222.1 and Xcc-8004.1223.1 overlap by 4 nucleotidesXcc-8004.1223.1 and Xcc-8004.1224.1 are separated by 16 nucleotides Xcc-8004.1221.1: Xcc-8004.1221.1 - Ribonuclease PH (EC 2.7.7.56), at 1,153,528 to 1,154,253 Xcc-8004.1221.1 Xcc-8004.1222.1: Xcc-8004.1222.1 - Glyoxalase family protein, at 1,154,250 to 1,154,642 Xcc-8004.1222.1 Xcc-8004.1223.1: Xcc-8004.1223.1 - Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15), at 1,154,639 to 1,155,238 Xcc-8004.1223.1 Xcc-8004.1224.1: Xcc-8004.1224.1 - Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB, at 1,155,255 to 1,156,412 Xcc-8004.1224.1 Position (kb) 1154 1155 1156Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1153.723 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.936 kb on + strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1153.937 kb on - strand, within Xcc-8004.1221.1at 1154.031 kb on + strand, within Xcc-8004.1221.1at 1154.031 kb on + strand, within Xcc-8004.1221.1at 1154.032 kb on - strand, within Xcc-8004.1221.1at 1154.036 kb on - strand, within Xcc-8004.1221.1at 1154.313 kb on + strand, within Xcc-8004.1222.1at 1154.313 kb on + strand, within Xcc-8004.1222.1at 1154.314 kb on - strand, within Xcc-8004.1222.1at 1154.494 kb on - strand, within Xcc-8004.1222.1at 1154.623 kb on + strandat 1154.623 kb on + strandat 1154.623 kb on + strandat 1154.624 kb on - strandat 1154.889 kb on - strand, within Xcc-8004.1223.1at 1154.993 kb on + strand, within Xcc-8004.1223.1at 1155.105 kb on - strand, within Xcc-8004.1223.1at 1155.288 kb on + strandat 1155.288 kb on + strandat 1155.288 kb on + strandat 1155.288 kb on + strandat 1155.288 kb on + strandat 1155.288 kb on + strandat 1155.289 kb on - strandat 1155.325 kb on - strandat 1155.375 kb on + strand, within Xcc-8004.1224.1at 1155.376 kb on - strand, within Xcc-8004.1224.1at 1155.376 kb on - strand, within Xcc-8004.1224.1at 1155.598 kb on - strand, within Xcc-8004.1224.1at 1155.730 kb on - strand, within Xcc-8004.1224.1at 1155.756 kb on + strand, within Xcc-8004.1224.1at 1155.757 kb on - strand, within Xcc-8004.1224.1at 1155.824 kb on + strand, within Xcc-8004.1224.1at 1155.824 kb on + strand, within Xcc-8004.1224.1at 1155.824 kb on + strand, within Xcc-8004.1224.1at 1155.825 kb on - strand, within Xcc-8004.1224.1at 1155.840 kb on + strand, within Xcc-8004.1224.1at 1155.969 kb on + strand, within Xcc-8004.1224.1at 1155.969 kb on + strand, within Xcc-8004.1224.1at 1155.970 kb on - strand, within Xcc-8004.1224.1at 1155.985 kb on - strand, within Xcc-8004.1224.1at 1156.023 kb on + strand, within Xcc-8004.1224.1at 1156.024 kb on - strand, within Xcc-8004.1224.1at 1156.024 kb on - strand, within Xcc-8004.1224.1at 1156.041 kb on + strand, within Xcc-8004.1224.1at 1156.042 kb on - strand, within Xcc-8004.1224.1at 1156.134 kb on + strand, within Xcc-8004.1224.1at 1156.135 kb on - strand, within Xcc-8004.1224.1at 1156.135 kb on - strand, within Xcc-8004.1224.1at 1156.209 kb on + strand, within Xcc-8004.1224.1at 1156.209 kb on + strand, within Xcc-8004.1224.1at 1156.210 kb on - strand, within Xcc-8004.1224.1at 1156.210 kb on - strand, within Xcc-8004.1224.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,153,723 + Xcc-8004.1221.1 0.27 -0.6
1,153,936 + Xcc-8004.1221.1 0.56 +0.0
1,153,936 + Xcc-8004.1221.1 0.56 -1.9
1,153,936 + Xcc-8004.1221.1 0.56 -0.0
1,153,936 + Xcc-8004.1221.1 0.56 -1.3
1,153,937 - Xcc-8004.1221.1 0.56 -0.8
1,153,937 - Xcc-8004.1221.1 0.56 -1.9
1,153,937 - Xcc-8004.1221.1 0.56 -1.0
1,153,937 - Xcc-8004.1221.1 0.56 -0.6
1,154,031 + Xcc-8004.1221.1 0.69 -1.4
1,154,031 + Xcc-8004.1221.1 0.69 +1.4
1,154,032 - Xcc-8004.1221.1 0.69 -1.0
1,154,036 - Xcc-8004.1221.1 0.70 -1.2
1,154,313 + Xcc-8004.1222.1 0.16 -0.2
1,154,313 + Xcc-8004.1222.1 0.16 +0.3
1,154,314 - Xcc-8004.1222.1 0.16 +0.3
1,154,494 - Xcc-8004.1222.1 0.62 -0.8
1,154,623 + +3.2
1,154,623 + -1.9
1,154,623 + +0.4
1,154,624 - +0.1
1,154,889 - Xcc-8004.1223.1 0.42 -0.9
1,154,993 + Xcc-8004.1223.1 0.59 +1.1
1,155,105 - Xcc-8004.1223.1 0.78 +2.7
1,155,288 + -0.2
1,155,288 + +1.0
1,155,288 + +1.0
1,155,288 + +1.4
1,155,288 + -0.4
1,155,288 + +0.6
1,155,289 - -2.3
1,155,325 - +0.4
1,155,375 + Xcc-8004.1224.1 0.10 -0.3
1,155,376 - Xcc-8004.1224.1 0.10 -0.2
1,155,376 - Xcc-8004.1224.1 0.10 +1.3
1,155,598 - Xcc-8004.1224.1 0.30 -1.8
1,155,730 - Xcc-8004.1224.1 0.41 +1.5
1,155,756 + Xcc-8004.1224.1 0.43 +1.3
1,155,757 - Xcc-8004.1224.1 0.43 -2.2
1,155,824 + Xcc-8004.1224.1 0.49 +2.1
1,155,824 + Xcc-8004.1224.1 0.49 -0.0
1,155,824 + Xcc-8004.1224.1 0.49 -0.9
1,155,825 - Xcc-8004.1224.1 0.49 -0.3
1,155,840 + Xcc-8004.1224.1 0.51 -0.6
1,155,969 + Xcc-8004.1224.1 0.62 -1.5
1,155,969 + Xcc-8004.1224.1 0.62 +1.0
1,155,970 - Xcc-8004.1224.1 0.62 +0.1
1,155,985 - Xcc-8004.1224.1 0.63 +2.1
1,156,023 + Xcc-8004.1224.1 0.66 -1.9
1,156,024 - Xcc-8004.1224.1 0.66 +1.0
1,156,024 - Xcc-8004.1224.1 0.66 -0.7
1,156,041 + Xcc-8004.1224.1 0.68 -0.0
1,156,042 - Xcc-8004.1224.1 0.68 +0.1
1,156,134 + Xcc-8004.1224.1 0.76 +2.2
1,156,135 - Xcc-8004.1224.1 0.76 +2.5
1,156,135 - Xcc-8004.1224.1 0.76 +1.4
1,156,209 + Xcc-8004.1224.1 0.82 -1.3
1,156,209 + Xcc-8004.1224.1 0.82 +0.4
1,156,210 - Xcc-8004.1224.1 0.82 +1.5
1,156,210 - Xcc-8004.1224.1 0.82 -1.1

Or see this region's nucleotide sequence