Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1171.1 and Xcc-8004.1172.1 overlap by 26 nucleotides Xcc-8004.1172.1 and Xcc-8004.1174.1 are separated by 293 nucleotides
Xcc-8004.1171.1: Xcc-8004.1171.1 - Reductase, at 1,106,044 to 1,106,874
Xcc-8004.1171.1
Xcc-8004.1172.1: Xcc-8004.1172.1 - Transcriptional regulator, at 1,106,849 to 1,107,820
Xcc-8004.1172.1
Xcc-8004.1174.1: Xcc-8004.1174.1 - Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid, at 1,108,114 to 1,109,634
Xcc-8004.1174.1
Position (kb) 1106
1107
1108 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1105.883 kb on + strand at 1105.968 kb on - strand at 1106.111 kb on - strand at 1106.265 kb on + strand, within Xcc-8004.1171.1 at 1106.265 kb on + strand, within Xcc-8004.1171.1 at 1106.295 kb on - strand, within Xcc-8004.1171.1 at 1106.334 kb on - strand, within Xcc-8004.1171.1 at 1106.436 kb on - strand, within Xcc-8004.1171.1 at 1106.436 kb on - strand, within Xcc-8004.1171.1 at 1106.699 kb on + strand, within Xcc-8004.1171.1 at 1106.699 kb on + strand, within Xcc-8004.1171.1 at 1106.700 kb on - strand, within Xcc-8004.1171.1 at 1106.700 kb on - strand, within Xcc-8004.1171.1 at 1106.700 kb on - strand, within Xcc-8004.1171.1 at 1106.841 kb on + strand at 1106.844 kb on + strand at 1106.862 kb on + strand at 1106.862 kb on + strand at 1106.863 kb on - strand at 1107.104 kb on + strand, within Xcc-8004.1172.1 at 1107.419 kb on + strand, within Xcc-8004.1172.1 at 1107.482 kb on + strand, within Xcc-8004.1172.1 at 1107.483 kb on - strand, within Xcc-8004.1172.1 at 1107.483 kb on - strand, within Xcc-8004.1172.1 at 1107.540 kb on - strand, within Xcc-8004.1172.1 at 1107.590 kb on + strand, within Xcc-8004.1172.1 at 1107.590 kb on + strand, within Xcc-8004.1172.1 at 1107.744 kb on + strand at 1107.846 kb on + strand at 1107.901 kb on - strand at 1107.901 kb on - strand at 1107.905 kb on + strand at 1107.906 kb on - strand at 1107.906 kb on - strand at 1108.016 kb on + strand at 1108.124 kb on + strand at 1108.125 kb on - strand at 1108.193 kb on + strand at 1108.280 kb on + strand, within Xcc-8004.1174.1 at 1108.281 kb on - strand, within Xcc-8004.1174.1 at 1108.281 kb on - strand, within Xcc-8004.1174.1 at 1108.304 kb on + strand, within Xcc-8004.1174.1 at 1108.305 kb on - strand, within Xcc-8004.1174.1 at 1108.319 kb on + strand, within Xcc-8004.1174.1 at 1108.319 kb on + strand, within Xcc-8004.1174.1 at 1108.319 kb on + strand, within Xcc-8004.1174.1 at 1108.320 kb on - strand, within Xcc-8004.1174.1 at 1108.322 kb on + strand, within Xcc-8004.1174.1 at 1108.388 kb on + strand, within Xcc-8004.1174.1 at 1108.389 kb on - strand, within Xcc-8004.1174.1 at 1108.414 kb on - strand, within Xcc-8004.1174.1 at 1108.428 kb on + strand, within Xcc-8004.1174.1 at 1108.463 kb on + strand, within Xcc-8004.1174.1 at 1108.559 kb on + strand, within Xcc-8004.1174.1 at 1108.559 kb on + strand, within Xcc-8004.1174.1 at 1108.560 kb on - strand, within Xcc-8004.1174.1 at 1108.772 kb on + strand, within Xcc-8004.1174.1 at 1108.773 kb on - strand, within Xcc-8004.1174.1 at 1108.773 kb on - strand, within Xcc-8004.1174.1 at 1108.773 kb on - strand, within Xcc-8004.1174.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes) remove 1,105,883 + +0.1 1,105,968 - -1.9 1,106,111 - -1.6 1,106,265 + Xcc-8004.1171.1 0.27 -1.3 1,106,265 + Xcc-8004.1171.1 0.27 -2.7 1,106,295 - Xcc-8004.1171.1 0.30 -1.2 1,106,334 - Xcc-8004.1171.1 0.35 -0.6 1,106,436 - Xcc-8004.1171.1 0.47 -0.6 1,106,436 - Xcc-8004.1171.1 0.47 -0.3 1,106,699 + Xcc-8004.1171.1 0.79 +0.7 1,106,699 + Xcc-8004.1171.1 0.79 +0.7 1,106,700 - Xcc-8004.1171.1 0.79 -1.1 1,106,700 - Xcc-8004.1171.1 0.79 +0.3 1,106,700 - Xcc-8004.1171.1 0.79 -0.9 1,106,841 + -1.4 1,106,844 + -1.4 1,106,862 + +1.3 1,106,862 + -1.0 1,106,863 - -0.6 1,107,104 + Xcc-8004.1172.1 0.26 -1.2 1,107,419 + Xcc-8004.1172.1 0.59 +1.2 1,107,482 + Xcc-8004.1172.1 0.65 +2.5 1,107,483 - Xcc-8004.1172.1 0.65 +0.9 1,107,483 - Xcc-8004.1172.1 0.65 +3.5 1,107,540 - Xcc-8004.1172.1 0.71 +0.9 1,107,590 + Xcc-8004.1172.1 0.76 +0.7 1,107,590 + Xcc-8004.1172.1 0.76 -1.7 1,107,744 + +1.0 1,107,846 + +1.7 1,107,901 - -1.1 1,107,901 - -1.3 1,107,905 + +2.0 1,107,906 - +2.8 1,107,906 - +1.0 1,108,016 + -1.9 1,108,124 + +0.1 1,108,125 - -0.5 1,108,193 + +0.7 1,108,280 + Xcc-8004.1174.1 0.11 +0.8 1,108,281 - Xcc-8004.1174.1 0.11 -1.5 1,108,281 - Xcc-8004.1174.1 0.11 +1.5 1,108,304 + Xcc-8004.1174.1 0.12 +0.5 1,108,305 - Xcc-8004.1174.1 0.13 +0.6 1,108,319 + Xcc-8004.1174.1 0.13 +0.9 1,108,319 + Xcc-8004.1174.1 0.13 -1.2 1,108,319 + Xcc-8004.1174.1 0.13 -0.2 1,108,320 - Xcc-8004.1174.1 0.14 +0.1 1,108,322 + Xcc-8004.1174.1 0.14 +0.9 1,108,388 + Xcc-8004.1174.1 0.18 -0.9 1,108,389 - Xcc-8004.1174.1 0.18 +0.7 1,108,414 - Xcc-8004.1174.1 0.20 -0.7 1,108,428 + Xcc-8004.1174.1 0.21 -0.2 1,108,463 + Xcc-8004.1174.1 0.23 -2.9 1,108,559 + Xcc-8004.1174.1 0.29 -0.3 1,108,559 + Xcc-8004.1174.1 0.29 +0.4 1,108,560 - Xcc-8004.1174.1 0.29 +0.5 1,108,772 + Xcc-8004.1174.1 0.43 +0.6 1,108,773 - Xcc-8004.1174.1 0.43 +0.4 1,108,773 - Xcc-8004.1174.1 0.43 +0.0 1,108,773 - Xcc-8004.1174.1 0.43 +0.9
Or see this region's nucleotide sequence