Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1063.1

Experiment: Xylemvessel barcodes Location 3 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1062.1 and Xcc-8004.1063.1 are separated by 12 nucleotidesXcc-8004.1063.1 and Xcc-8004.1064.1 are separated by 257 nucleotidesXcc-8004.1064.1 and Xcc-8004.1066.1 are separated by 328 nucleotides Xcc-8004.1062.1: Xcc-8004.1062.1 - chemotaxis protein, at 1,015,430 to 1,017,268 Xcc-8004.1062.1 Xcc-8004.1063.1: Xcc-8004.1063.1 - hypothetical protein, at 1,017,281 to 1,019,260 Xcc-8004.1063.1 Xcc-8004.1064.1: Xcc-8004.1064.1 - hypothetical protein, at 1,019,518 to 1,019,697 Xcc-8004.1064.1 Xcc-8004.1066.1: Xcc-8004.1066.1 - hypothetical protein, at 1,020,026 to 1,021,903 Xcc-8004.1066.1 Position (kb) 1017 1018 1019 1020Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1016.314 kb on + strand, within Xcc-8004.1062.1at 1016.315 kb on - strand, within Xcc-8004.1062.1at 1016.634 kb on + strand, within Xcc-8004.1062.1at 1016.634 kb on + strand, within Xcc-8004.1062.1at 1016.872 kb on + strand, within Xcc-8004.1062.1at 1016.873 kb on - strand, within Xcc-8004.1062.1at 1016.873 kb on - strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1016.876 kb on + strand, within Xcc-8004.1062.1at 1017.020 kb on + strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.021 kb on - strand, within Xcc-8004.1062.1at 1017.168 kb on - strandat 1017.168 kb on - strandat 1017.255 kb on - strandat 1017.266 kb on + strandat 1017.397 kb on - strandat 1017.516 kb on - strand, within Xcc-8004.1063.1at 1017.610 kb on - strand, within Xcc-8004.1063.1at 1017.621 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.651 kb on + strand, within Xcc-8004.1063.1at 1017.669 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.738 kb on + strand, within Xcc-8004.1063.1at 1017.739 kb on - strand, within Xcc-8004.1063.1at 1017.739 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.760 kb on - strand, within Xcc-8004.1063.1at 1017.900 kb on + strand, within Xcc-8004.1063.1at 1017.901 kb on - strand, within Xcc-8004.1063.1at 1018.160 kb on - strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.182 kb on + strand, within Xcc-8004.1063.1at 1018.183 kb on - strand, within Xcc-8004.1063.1at 1018.183 kb on - strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.209 kb on + strand, within Xcc-8004.1063.1at 1018.210 kb on - strand, within Xcc-8004.1063.1at 1018.263 kb on + strand, within Xcc-8004.1063.1at 1018.326 kb on + strand, within Xcc-8004.1063.1at 1018.410 kb on + strand, within Xcc-8004.1063.1at 1018.410 kb on + strand, within Xcc-8004.1063.1at 1018.494 kb on + strand, within Xcc-8004.1063.1at 1018.494 kb on + strand, within Xcc-8004.1063.1at 1018.495 kb on - strand, within Xcc-8004.1063.1at 1018.495 kb on - strand, within Xcc-8004.1063.1at 1018.503 kb on + strand, within Xcc-8004.1063.1at 1018.503 kb on + strand, within Xcc-8004.1063.1at 1018.593 kb on + strand, within Xcc-8004.1063.1at 1018.593 kb on + strand, within Xcc-8004.1063.1at 1018.594 kb on - strand, within Xcc-8004.1063.1at 1018.594 kb on - strand, within Xcc-8004.1063.1at 1018.633 kb on - strand, within Xcc-8004.1063.1at 1018.633 kb on - strand, within Xcc-8004.1063.1at 1018.728 kb on + strand, within Xcc-8004.1063.1at 1018.728 kb on + strand, within Xcc-8004.1063.1at 1018.729 kb on - strand, within Xcc-8004.1063.1at 1018.729 kb on - strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.770 kb on + strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.771 kb on - strand, within Xcc-8004.1063.1at 1018.807 kb on + strand, within Xcc-8004.1063.1at 1018.809 kb on + strand, within Xcc-8004.1063.1at 1018.810 kb on - strand, within Xcc-8004.1063.1at 1018.860 kb on + strand, within Xcc-8004.1063.1at 1018.861 kb on - strand, within Xcc-8004.1063.1at 1018.861 kb on - strand, within Xcc-8004.1063.1at 1018.861 kb on - strand, within Xcc-8004.1063.1at 1018.861 kb on - strand, within Xcc-8004.1063.1at 1018.866 kb on + strand, within Xcc-8004.1063.1at 1018.866 kb on + strand, within Xcc-8004.1063.1at 1018.866 kb on + strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1018.867 kb on - strand, within Xcc-8004.1063.1at 1019.005 kb on - strand, within Xcc-8004.1063.1at 1019.067 kb on + strandat 1019.067 kb on + strandat 1019.067 kb on + strandat 1019.067 kb on + strandat 1019.068 kb on - strandat 1019.068 kb on - strandat 1019.068 kb on - strandat 1019.068 kb on - strandat 1019.283 kb on + strandat 1019.288 kb on - strandat 1019.310 kb on + strandat 1019.310 kb on + strandat 1019.310 kb on + strandat 1019.310 kb on + strandat 1019.311 kb on - strandat 1019.311 kb on - strandat 1019.311 kb on - strandat 1019.311 kb on - strandat 1019.311 kb on - strandat 1019.311 kb on - strandat 1019.372 kb on + strandat 1019.372 kb on + strandat 1019.372 kb on + strandat 1019.372 kb on + strandat 1019.372 kb on + strandat 1019.372 kb on + strandat 1019.373 kb on - strandat 1019.373 kb on - strandat 1019.386 kb on + strandat 1019.387 kb on - strandat 1019.387 kb on - strandat 1019.387 kb on - strandat 1019.387 kb on - strandat 1019.393 kb on - strandat 1019.393 kb on - strandat 1019.551 kb on + strand, within Xcc-8004.1064.1at 1019.551 kb on + strand, within Xcc-8004.1064.1at 1019.552 kb on - strand, within Xcc-8004.1064.1at 1019.728 kb on + strandat 1019.728 kb on + strandat 1019.728 kb on + strandat 1019.729 kb on - strandat 1019.729 kb on - strandat 1019.808 kb on - strandat 1019.828 kb on + strandat 1019.829 kb on - strandat 1019.853 kb on + strandat 1019.853 kb on + strandat 1019.880 kb on + strandat 1019.903 kb on - strandat 1019.903 kb on - strandat 1020.218 kb on + strand, within Xcc-8004.1066.1at 1020.218 kb on + strand, within Xcc-8004.1066.1at 1020.219 kb on - strand, within Xcc-8004.1066.1at 1020.236 kb on + strand, within Xcc-8004.1066.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 4 dpi (25 plantes)
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1,016,314 + Xcc-8004.1062.1 0.48 +1.5
1,016,315 - Xcc-8004.1062.1 0.48 +0.8
1,016,634 + Xcc-8004.1062.1 0.65 +2.5
1,016,634 + Xcc-8004.1062.1 0.65 +0.1
1,016,872 + Xcc-8004.1062.1 0.78 +3.1
1,016,873 - Xcc-8004.1062.1 0.78 -1.5
1,016,873 - Xcc-8004.1062.1 0.78 +0.6
1,016,876 + Xcc-8004.1062.1 0.79 -2.1
1,016,876 + Xcc-8004.1062.1 0.79 +0.1
1,016,876 + Xcc-8004.1062.1 0.79 +1.6
1,016,876 + Xcc-8004.1062.1 0.79 -0.7
1,017,020 + Xcc-8004.1062.1 0.86 -1.5
1,017,021 - Xcc-8004.1062.1 0.87 -0.8
1,017,021 - Xcc-8004.1062.1 0.87 -0.5
1,017,021 - Xcc-8004.1062.1 0.87 -1.5
1,017,168 - +0.6
1,017,168 - -0.6
1,017,255 - +1.2
1,017,266 + +0.3
1,017,397 - +0.0
1,017,516 - Xcc-8004.1063.1 0.12 -1.0
1,017,610 - Xcc-8004.1063.1 0.17 -2.4
1,017,621 + Xcc-8004.1063.1 0.17 -3.3
1,017,651 + Xcc-8004.1063.1 0.19 +0.3
1,017,651 + Xcc-8004.1063.1 0.19 -0.3
1,017,651 + Xcc-8004.1063.1 0.19 +0.4
1,017,651 + Xcc-8004.1063.1 0.19 +2.2
1,017,651 + Xcc-8004.1063.1 0.19 +1.2
1,017,651 + Xcc-8004.1063.1 0.19 -2.2
1,017,651 + Xcc-8004.1063.1 0.19 -1.7
1,017,669 + Xcc-8004.1063.1 0.20 -0.6
1,017,738 + Xcc-8004.1063.1 0.23 +1.5
1,017,738 + Xcc-8004.1063.1 0.23 +0.3
1,017,738 + Xcc-8004.1063.1 0.23 -0.5
1,017,739 - Xcc-8004.1063.1 0.23 +0.7
1,017,739 - Xcc-8004.1063.1 0.23 -0.7
1,017,760 - Xcc-8004.1063.1 0.24 -0.5
1,017,760 - Xcc-8004.1063.1 0.24 -0.1
1,017,760 - Xcc-8004.1063.1 0.24 +0.9
1,017,760 - Xcc-8004.1063.1 0.24 +0.1
1,017,900 + Xcc-8004.1063.1 0.31 -0.7
1,017,901 - Xcc-8004.1063.1 0.31 -0.9
1,018,160 - Xcc-8004.1063.1 0.44 -0.1
1,018,182 + Xcc-8004.1063.1 0.46 -0.1
1,018,182 + Xcc-8004.1063.1 0.46 +0.3
1,018,182 + Xcc-8004.1063.1 0.46 -1.1
1,018,182 + Xcc-8004.1063.1 0.46 +1.5
1,018,183 - Xcc-8004.1063.1 0.46 -0.8
1,018,183 - Xcc-8004.1063.1 0.46 +0.2
1,018,209 + Xcc-8004.1063.1 0.47 +1.2
1,018,209 + Xcc-8004.1063.1 0.47 +0.6
1,018,209 + Xcc-8004.1063.1 0.47 -2.1
1,018,209 + Xcc-8004.1063.1 0.47 +0.5
1,018,209 + Xcc-8004.1063.1 0.47 -0.6
1,018,210 - Xcc-8004.1063.1 0.47 -2.6
1,018,263 + Xcc-8004.1063.1 0.50 +0.5
1,018,326 + Xcc-8004.1063.1 0.53 -1.8
1,018,410 + Xcc-8004.1063.1 0.57 +0.2
1,018,410 + Xcc-8004.1063.1 0.57 +0.2
1,018,494 + Xcc-8004.1063.1 0.61 -0.8
1,018,494 + Xcc-8004.1063.1 0.61 +1.1
1,018,495 - Xcc-8004.1063.1 0.61 +0.5
1,018,495 - Xcc-8004.1063.1 0.61 +0.8
1,018,503 + Xcc-8004.1063.1 0.62 -0.2
1,018,503 + Xcc-8004.1063.1 0.62 -2.8
1,018,593 + Xcc-8004.1063.1 0.66 +0.3
1,018,593 + Xcc-8004.1063.1 0.66 +0.8
1,018,594 - Xcc-8004.1063.1 0.66 -1.5
1,018,594 - Xcc-8004.1063.1 0.66 -1.2
1,018,633 - Xcc-8004.1063.1 0.68 +0.1
1,018,633 - Xcc-8004.1063.1 0.68 -0.4
1,018,728 + Xcc-8004.1063.1 0.73 -1.1
1,018,728 + Xcc-8004.1063.1 0.73 +1.7
1,018,729 - Xcc-8004.1063.1 0.73 -0.1
1,018,729 - Xcc-8004.1063.1 0.73 -1.7
1,018,770 + Xcc-8004.1063.1 0.75 +0.9
1,018,770 + Xcc-8004.1063.1 0.75 -0.2
1,018,770 + Xcc-8004.1063.1 0.75 -0.2
1,018,770 + Xcc-8004.1063.1 0.75 -0.7
1,018,770 + Xcc-8004.1063.1 0.75 +0.6
1,018,770 + Xcc-8004.1063.1 0.75 +0.0
1,018,771 - Xcc-8004.1063.1 0.75 +1.5
1,018,771 - Xcc-8004.1063.1 0.75 +0.4
1,018,771 - Xcc-8004.1063.1 0.75 +0.6
1,018,771 - Xcc-8004.1063.1 0.75 -0.3
1,018,771 - Xcc-8004.1063.1 0.75 -2.4
1,018,771 - Xcc-8004.1063.1 0.75 +1.2
1,018,771 - Xcc-8004.1063.1 0.75 -0.3
1,018,807 + Xcc-8004.1063.1 0.77 -1.5
1,018,809 + Xcc-8004.1063.1 0.77 -1.5
1,018,810 - Xcc-8004.1063.1 0.77 -0.5
1,018,860 + Xcc-8004.1063.1 0.80 -1.1
1,018,861 - Xcc-8004.1063.1 0.80 +1.5
1,018,861 - Xcc-8004.1063.1 0.80 +1.6
1,018,861 - Xcc-8004.1063.1 0.80 +1.0
1,018,861 - Xcc-8004.1063.1 0.80 +1.1
1,018,866 + Xcc-8004.1063.1 0.80 +3.5
1,018,866 + Xcc-8004.1063.1 0.80 -0.7
1,018,866 + Xcc-8004.1063.1 0.80 +0.8
1,018,867 - Xcc-8004.1063.1 0.80 +0.1
1,018,867 - Xcc-8004.1063.1 0.80 -2.1
1,018,867 - Xcc-8004.1063.1 0.80 +0.2
1,018,867 - Xcc-8004.1063.1 0.80 -2.4
1,018,867 - Xcc-8004.1063.1 0.80 +0.9
1,018,867 - Xcc-8004.1063.1 0.80 +2.5
1,018,867 - Xcc-8004.1063.1 0.80 +1.2
1,019,005 - Xcc-8004.1063.1 0.87 +0.9
1,019,067 + -1.3
1,019,067 + -0.2
1,019,067 + +0.5
1,019,067 + -0.8
1,019,068 - -0.2
1,019,068 - -1.3
1,019,068 - +0.4
1,019,068 - -0.6
1,019,283 + +0.9
1,019,288 - -2.2
1,019,310 + -2.4
1,019,310 + -2.6
1,019,310 + +1.6
1,019,310 + -0.1
1,019,311 - -0.2
1,019,311 - -0.7
1,019,311 - +0.4
1,019,311 - +0.3
1,019,311 - -0.5
1,019,311 - +1.4
1,019,372 + +1.1
1,019,372 + -0.7
1,019,372 + -1.5
1,019,372 + -0.5
1,019,372 + +0.7
1,019,372 + -1.6
1,019,373 - -0.7
1,019,373 - +0.4
1,019,386 + -0.5
1,019,387 - -2.8
1,019,387 - +1.0
1,019,387 - +2.3
1,019,387 - +1.8
1,019,393 - +1.7
1,019,393 - +0.0
1,019,551 + Xcc-8004.1064.1 0.18 -0.1
1,019,551 + Xcc-8004.1064.1 0.18 +0.7
1,019,552 - Xcc-8004.1064.1 0.19 -0.4
1,019,728 + -0.0
1,019,728 + -0.3
1,019,728 + -1.1
1,019,729 - -3.1
1,019,729 - -0.1
1,019,808 - +4.1
1,019,828 + +1.2
1,019,829 - +0.7
1,019,853 + -0.6
1,019,853 + -1.9
1,019,880 + +0.4
1,019,903 - -1.0
1,019,903 - +1.2
1,020,218 + Xcc-8004.1066.1 0.10 +1.1
1,020,218 + Xcc-8004.1066.1 0.10 -1.1
1,020,219 - Xcc-8004.1066.1 0.10 -1.1
1,020,236 + Xcc-8004.1066.1 0.11 +2.9

Or see this region's nucleotide sequence