Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.973.1 and Xcc-8004.974.1 overlap by 4 nucleotides Xcc-8004.974.1 and Xcc-8004.976.1 are separated by 12 nucleotides Xcc-8004.976.1 and Xcc-8004.977.1 are separated by 173 nucleotides Xcc-8004.977.1 and Xcc-8004.978.1 are separated by 64 nucleotides
Xcc-8004.973.1: Xcc-8004.973.1 - Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-), at 925,326 to 926,822
Xcc-8004.973.1
Xcc-8004.974.1: Xcc-8004.974.1 - two-component system regulatory protein, at 926,819 to 927,661
Xcc-8004.974.1
Xcc-8004.976.1: Xcc-8004.976.1 - FIG01209789: hypothetical protein, at 927,674 to 928,771
Xcc-8004.976.1
Xcc-8004.977.1: Xcc-8004.977.1 - hypothetical protein, at 928,945 to 929,451
Xcc-8004.977.1
Xcc-8004.978.1: Xcc-8004.978.1 - C4-dicarboxylate transporter/malic acid transport protein, at 929,516 to 930,697
Xcc-8004.978.1
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5 at 926.701 kb on + strand at 926.701 kb on + strand at 926.701 kb on + strand at 926.701 kb on + strand at 926.702 kb on - strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.850 kb on + strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.851 kb on - strand at 926.946 kb on + strand, within Xcc-8004.974.1 at 926.946 kb on + strand, within Xcc-8004.974.1 at 926.947 kb on - strand, within Xcc-8004.974.1 at 926.974 kb on - strand, within Xcc-8004.974.1 at 927.068 kb on - strand, within Xcc-8004.974.1 at 927.127 kb on - strand, within Xcc-8004.974.1 at 927.127 kb on - strand, within Xcc-8004.974.1 at 927.232 kb on - strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.271 kb on + strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.272 kb on - strand, within Xcc-8004.974.1 at 927.377 kb on + strand, within Xcc-8004.974.1 at 927.377 kb on + strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.378 kb on - strand, within Xcc-8004.974.1 at 927.450 kb on + strand, within Xcc-8004.974.1 at 927.451 kb on - strand, within Xcc-8004.974.1 at 927.451 kb on - strand, within Xcc-8004.974.1 at 927.631 kb on + strand at 927.631 kb on + strand at 927.632 kb on - strand at 927.968 kb on + strand, within Xcc-8004.976.1 at 927.969 kb on - strand, within Xcc-8004.976.1 at 928.127 kb on + strand, within Xcc-8004.976.1 at 928.127 kb on + strand, within Xcc-8004.976.1 at 928.127 kb on + strand, within Xcc-8004.976.1 at 928.127 kb on + strand, within Xcc-8004.976.1 at 928.128 kb on - strand, within Xcc-8004.976.1 at 928.128 kb on - strand, within Xcc-8004.976.1 at 928.128 kb on - strand, within Xcc-8004.976.1 at 928.205 kb on - strand, within Xcc-8004.976.1 at 928.205 kb on - strand, within Xcc-8004.976.1 at 928.205 kb on - strand, within Xcc-8004.976.1 at 928.390 kb on + strand, within Xcc-8004.976.1 at 928.424 kb on + strand, within Xcc-8004.976.1 at 928.425 kb on - strand, within Xcc-8004.976.1 at 928.425 kb on - strand, within Xcc-8004.976.1 at 928.425 kb on - strand, within Xcc-8004.976.1 at 928.556 kb on + strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.557 kb on - strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.562 kb on + strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.563 kb on - strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.658 kb on + strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.659 kb on - strand, within Xcc-8004.976.1 at 928.790 kb on + strand at 928.790 kb on + strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.814 kb on - strand at 928.928 kb on + strand at 928.929 kb on - strand at 928.929 kb on - strand at 929.101 kb on - strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.166 kb on + strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.167 kb on - strand, within Xcc-8004.977.1 at 929.177 kb on + strand, within Xcc-8004.977.1 at 929.178 kb on - strand, within Xcc-8004.977.1 at 929.512 kb on + strand at 929.512 kb on + strand at 929.512 kb on + strand at 929.513 kb on - strand at 929.627 kb on + strand at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.643 kb on - strand, within Xcc-8004.978.1 at 929.655 kb on - strand, within Xcc-8004.978.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 926,701 + -2.8 926,701 + -0.2 926,701 + +2.1 926,701 + -0.6 926,702 - -2.0 926,850 + +1.1 926,850 + -0.6 926,850 + -0.5 926,850 + +0.0 926,851 - +1.2 926,851 - +1.5 926,851 - -0.0 926,851 - -0.2 926,851 - +2.7 926,851 - -0.7 926,851 - +0.7 926,946 + Xcc-8004.974.1 0.15 +0.4 926,946 + Xcc-8004.974.1 0.15 -0.6 926,947 - Xcc-8004.974.1 0.15 -0.4 926,974 - Xcc-8004.974.1 0.18 -0.1 927,068 - Xcc-8004.974.1 0.30 +0.0 927,127 - Xcc-8004.974.1 0.37 +0.8 927,127 - Xcc-8004.974.1 0.37 -0.5 927,232 - Xcc-8004.974.1 0.49 -0.4 927,271 + Xcc-8004.974.1 0.54 +0.8 927,271 + Xcc-8004.974.1 0.54 +1.1 927,271 + Xcc-8004.974.1 0.54 +0.1 927,272 - Xcc-8004.974.1 0.54 +1.1 927,272 - Xcc-8004.974.1 0.54 -1.0 927,272 - Xcc-8004.974.1 0.54 -1.8 927,272 - Xcc-8004.974.1 0.54 -0.2 927,272 - Xcc-8004.974.1 0.54 -1.4 927,272 - Xcc-8004.974.1 0.54 +2.8 927,377 + Xcc-8004.974.1 0.66 +0.1 927,377 + Xcc-8004.974.1 0.66 +1.4 927,378 - Xcc-8004.974.1 0.66 -0.1 927,378 - Xcc-8004.974.1 0.66 -1.8 927,378 - Xcc-8004.974.1 0.66 +1.1 927,378 - Xcc-8004.974.1 0.66 -1.0 927,450 + Xcc-8004.974.1 0.75 -1.8 927,451 - Xcc-8004.974.1 0.75 -0.5 927,451 - Xcc-8004.974.1 0.75 +1.4 927,631 + +0.6 927,631 + -1.3 927,632 - -1.6 927,968 + Xcc-8004.976.1 0.27 -1.6 927,969 - Xcc-8004.976.1 0.27 -0.3 928,127 + Xcc-8004.976.1 0.41 -0.7 928,127 + Xcc-8004.976.1 0.41 -1.4 928,127 + Xcc-8004.976.1 0.41 +1.3 928,127 + Xcc-8004.976.1 0.41 -0.3 928,128 - Xcc-8004.976.1 0.41 +1.5 928,128 - Xcc-8004.976.1 0.41 -0.4 928,128 - Xcc-8004.976.1 0.41 +0.6 928,205 - Xcc-8004.976.1 0.48 +0.6 928,205 - Xcc-8004.976.1 0.48 +0.7 928,205 - Xcc-8004.976.1 0.48 -1.2 928,390 + Xcc-8004.976.1 0.65 -4.0 928,424 + Xcc-8004.976.1 0.68 -0.1 928,425 - Xcc-8004.976.1 0.68 -1.2 928,425 - Xcc-8004.976.1 0.68 -1.0 928,425 - Xcc-8004.976.1 0.68 -2.8 928,556 + Xcc-8004.976.1 0.80 +1.2 928,557 - Xcc-8004.976.1 0.80 -0.1 928,557 - Xcc-8004.976.1 0.80 +4.9 928,557 - Xcc-8004.976.1 0.80 +0.4 928,557 - Xcc-8004.976.1 0.80 -1.7 928,562 + Xcc-8004.976.1 0.81 -1.6 928,562 + Xcc-8004.976.1 0.81 +0.8 928,562 + Xcc-8004.976.1 0.81 +0.4 928,563 - Xcc-8004.976.1 0.81 -0.6 928,563 - Xcc-8004.976.1 0.81 -2.3 928,563 - Xcc-8004.976.1 0.81 -2.4 928,563 - Xcc-8004.976.1 0.81 -0.9 928,563 - Xcc-8004.976.1 0.81 +1.7 928,563 - Xcc-8004.976.1 0.81 -1.7 928,658 + Xcc-8004.976.1 0.90 +1.1 928,658 + Xcc-8004.976.1 0.90 +0.6 928,658 + Xcc-8004.976.1 0.90 -0.3 928,658 + Xcc-8004.976.1 0.90 +1.9 928,659 - Xcc-8004.976.1 0.90 +1.3 928,659 - Xcc-8004.976.1 0.90 +0.7 928,790 + -0.4 928,790 + -3.2 928,814 - +1.1 928,814 - +0.1 928,814 - -0.6 928,928 + +1.5 928,929 - +0.3 928,929 - +0.1 929,101 - Xcc-8004.977.1 0.31 -1.2 929,166 + Xcc-8004.977.1 0.44 -2.2 929,166 + Xcc-8004.977.1 0.44 -1.5 929,166 + Xcc-8004.977.1 0.44 -3.0 929,167 - Xcc-8004.977.1 0.44 -1.3 929,167 - Xcc-8004.977.1 0.44 +0.6 929,167 - Xcc-8004.977.1 0.44 +0.5 929,177 + Xcc-8004.977.1 0.46 +0.0 929,178 - Xcc-8004.977.1 0.46 +1.9 929,512 + -1.4 929,512 + +1.1 929,512 + -0.9 929,513 - +0.8 929,627 + +1.9 929,643 - Xcc-8004.978.1 0.11 +0.5 929,643 - Xcc-8004.978.1 0.11 +0.6 929,643 - Xcc-8004.978.1 0.11 +1.6 929,655 - Xcc-8004.978.1 0.12 -2.7
Or see this region's nucleotide sequence