Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5205.1 and Xcc-8004.5206.1 are separated by 70 nucleotides Xcc-8004.5206.1 and Xcc-8004.5207.1 overlap by 4 nucleotides Xcc-8004.5207.1 and Xcc-8004.5208.1 overlap by 38 nucleotides
Xcc-8004.5205.1: Xcc-8004.5205.1 - FIG01210461: hypothetical protein, at 4,940,336 to 4,941,232
Xcc-8004.5205.1
Xcc-8004.5206.1: Xcc-8004.5206.1 - Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1), at 4,941,303 to 4,942,352
Xcc-8004.5206.1
Xcc-8004.5207.1: Xcc-8004.5207.1 - 2-hydroxymuconic semialdehyde hydrolase (EC 3.7.1.9), at 4,942,349 to 4,943,221
Xcc-8004.5207.1
Xcc-8004.5208.1: Xcc-8004.5208.1 - FIG01210757: hypothetical protein, at 4,943,184 to 4,943,612
Xcc-8004.5208.1
Position (kb) 4941
4942
4943 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.556 kb on + strand, within Xcc-8004.5205.1 at 4940.557 kb on - strand, within Xcc-8004.5205.1 at 4940.557 kb on - strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.139 kb on + strand, within Xcc-8004.5205.1 at 4941.140 kb on - strand, within Xcc-8004.5205.1 at 4941.263 kb on + strand at 4941.263 kb on + strand at 4941.264 kb on - strand at 4941.282 kb on + strand at 4942.571 kb on + strand, within Xcc-8004.5207.1 at 4942.572 kb on - strand, within Xcc-8004.5207.1 at 4942.572 kb on - strand, within Xcc-8004.5207.1 at 4942.608 kb on + strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.609 kb on - strand, within Xcc-8004.5207.1 at 4942.934 kb on + strand, within Xcc-8004.5207.1 at 4942.934 kb on + strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4942.935 kb on - strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.017 kb on + strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.018 kb on - strand, within Xcc-8004.5207.1 at 4943.063 kb on + strand, within Xcc-8004.5207.1 at 4943.063 kb on + strand, within Xcc-8004.5207.1 at 4943.064 kb on - strand, within Xcc-8004.5207.1 at 4943.064 kb on - strand, within Xcc-8004.5207.1 at 4943.220 kb on - strand at 4943.220 kb on - strand at 4943.284 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.313 kb on + strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.314 kb on - strand, within Xcc-8004.5208.1 at 4943.344 kb on + strand, within Xcc-8004.5208.1 at 4943.344 kb on + strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1 at 4943.345 kb on - strand, within Xcc-8004.5208.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,940,556 + Xcc-8004.5205.1 0.25 +0.4 4,940,556 + Xcc-8004.5205.1 0.25 +0.0 4,940,556 + Xcc-8004.5205.1 0.25 +0.5 4,940,557 - Xcc-8004.5205.1 0.25 -0.2 4,940,557 - Xcc-8004.5205.1 0.25 -0.2 4,941,139 + Xcc-8004.5205.1 0.90 +1.5 4,941,139 + Xcc-8004.5205.1 0.90 +1.2 4,941,139 + Xcc-8004.5205.1 0.90 +0.7 4,941,140 - Xcc-8004.5205.1 0.90 +1.9 4,941,263 + +0.0 4,941,263 + -0.0 4,941,264 - +0.7 4,941,282 + +0.4 4,942,571 + Xcc-8004.5207.1 0.25 -1.2 4,942,572 - Xcc-8004.5207.1 0.26 +0.9 4,942,572 - Xcc-8004.5207.1 0.26 -1.7 4,942,608 + Xcc-8004.5207.1 0.30 -1.2 4,942,609 - Xcc-8004.5207.1 0.30 -1.3 4,942,609 - Xcc-8004.5207.1 0.30 +0.1 4,942,609 - Xcc-8004.5207.1 0.30 -2.2 4,942,609 - Xcc-8004.5207.1 0.30 -1.2 4,942,609 - Xcc-8004.5207.1 0.30 -0.2 4,942,934 + Xcc-8004.5207.1 0.67 -0.7 4,942,934 + Xcc-8004.5207.1 0.67 -2.5 4,942,935 - Xcc-8004.5207.1 0.67 +0.7 4,942,935 - Xcc-8004.5207.1 0.67 -0.5 4,942,935 - Xcc-8004.5207.1 0.67 -0.5 4,943,017 + Xcc-8004.5207.1 0.77 +1.9 4,943,017 + Xcc-8004.5207.1 0.77 -0.5 4,943,017 + Xcc-8004.5207.1 0.77 -0.7 4,943,017 + Xcc-8004.5207.1 0.77 +0.9 4,943,018 - Xcc-8004.5207.1 0.77 +0.1 4,943,018 - Xcc-8004.5207.1 0.77 +1.7 4,943,018 - Xcc-8004.5207.1 0.77 -1.4 4,943,063 + Xcc-8004.5207.1 0.82 -2.1 4,943,063 + Xcc-8004.5207.1 0.82 -2.4 4,943,064 - Xcc-8004.5207.1 0.82 -2.6 4,943,064 - Xcc-8004.5207.1 0.82 -0.2 4,943,220 - -0.6 4,943,220 - +0.3 4,943,284 + Xcc-8004.5208.1 0.23 -0.7 4,943,313 + Xcc-8004.5208.1 0.30 -0.7 4,943,313 + Xcc-8004.5208.1 0.30 -2.1 4,943,313 + Xcc-8004.5208.1 0.30 +0.2 4,943,313 + Xcc-8004.5208.1 0.30 -0.3 4,943,313 + Xcc-8004.5208.1 0.30 -1.3 4,943,313 + Xcc-8004.5208.1 0.30 -0.9 4,943,313 + Xcc-8004.5208.1 0.30 -0.1 4,943,314 - Xcc-8004.5208.1 0.30 +0.7 4,943,314 - Xcc-8004.5208.1 0.30 +0.2 4,943,314 - Xcc-8004.5208.1 0.30 -0.7 4,943,314 - Xcc-8004.5208.1 0.30 -1.6 4,943,344 + Xcc-8004.5208.1 0.37 +0.3 4,943,344 + Xcc-8004.5208.1 0.37 -0.9 4,943,345 - Xcc-8004.5208.1 0.38 +0.3 4,943,345 - Xcc-8004.5208.1 0.38 -1.9 4,943,345 - Xcc-8004.5208.1 0.38 -1.2 4,943,345 - Xcc-8004.5208.1 0.38 +0.3
Or see this region's nucleotide sequence