Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5041.1 and Xcc-8004.5042.1 overlap by 41 nucleotides Xcc-8004.5042.1 and Xcc-8004.5043.1 are separated by 346 nucleotides Xcc-8004.5043.1 and Xcc-8004.5044.1 are separated by 65 nucleotides
Xcc-8004.5041.1: Xcc-8004.5041.1 - FIG01211213: hypothetical protein, at 4,781,786 to 4,782,373
Xcc-8004.5041.1
Xcc-8004.5042.1: Xcc-8004.5042.1 - hypothetical protein, at 4,782,333 to 4,782,518
Xcc-8004.5042.1
Xcc-8004.5043.1: Xcc-8004.5043.1 - FIG01209879: hypothetical protein, at 4,782,865 to 4,783,137
Xcc-8004.5043.1
Xcc-8004.5044.1: Xcc-8004.5044.1 - Cobalt-zinc-cadmium resistance protein CzcD, at 4,783,203 to 4,784,204
Xcc-8004.5044.1
Position (kb)
4782
4783
4784 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.919 kb on + strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4781.920 kb on - strand, within Xcc-8004.5041.1 at 4782.119 kb on + strand, within Xcc-8004.5041.1 at 4782.120 kb on - strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.123 kb on + strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.124 kb on - strand, within Xcc-8004.5041.1 at 4782.153 kb on + strand, within Xcc-8004.5041.1 at 4782.247 kb on + strand, within Xcc-8004.5041.1 at 4782.270 kb on + strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.271 kb on - strand, within Xcc-8004.5041.1 at 4782.297 kb on + strand, within Xcc-8004.5041.1 at 4782.561 kb on + strand at 4782.561 kb on + strand at 4782.562 kb on - strand at 4782.562 kb on - strand at 4782.725 kb on + strand at 4782.725 kb on + strand at 4782.726 kb on - strand at 4782.867 kb on - strand at 4782.867 kb on - strand at 4782.875 kb on + strand at 4782.876 kb on - strand at 4782.876 kb on - strand at 4783.126 kb on + strand at 4783.126 kb on + strand at 4783.126 kb on + strand at 4783.126 kb on + strand at 4783.126 kb on + strand at 4783.126 kb on + strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.127 kb on - strand at 4783.179 kb on + strand at 4783.180 kb on - strand at 4783.184 kb on + strand at 4783.184 kb on + strand at 4783.184 kb on + strand at 4783.184 kb on + strand at 4783.184 kb on + strand at 4783.184 kb on + strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.185 kb on - strand at 4783.379 kb on + strand, within Xcc-8004.5044.1 at 4783.379 kb on + strand, within Xcc-8004.5044.1 at 4783.380 kb on - strand, within Xcc-8004.5044.1 at 4783.380 kb on - strand, within Xcc-8004.5044.1 at 4783.469 kb on + strand, within Xcc-8004.5044.1 at 4783.497 kb on + strand, within Xcc-8004.5044.1 at 4783.498 kb on - strand, within Xcc-8004.5044.1 at 4783.715 kb on + strand, within Xcc-8004.5044.1 at 4783.715 kb on + strand, within Xcc-8004.5044.1 at 4783.715 kb on + strand, within Xcc-8004.5044.1 at 4783.716 kb on - strand, within Xcc-8004.5044.1 at 4783.716 kb on - strand, within Xcc-8004.5044.1 at 4783.716 kb on - strand, within Xcc-8004.5044.1 at 4783.785 kb on + strand, within Xcc-8004.5044.1 at 4783.785 kb on + strand, within Xcc-8004.5044.1 at 4783.786 kb on - strand, within Xcc-8004.5044.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,781,919 + Xcc-8004.5041.1 0.23 +2.3 4,781,919 + Xcc-8004.5041.1 0.23 +0.8 4,781,920 - Xcc-8004.5041.1 0.23 +0.3 4,781,920 - Xcc-8004.5041.1 0.23 +1.6 4,781,920 - Xcc-8004.5041.1 0.23 -0.4 4,781,920 - Xcc-8004.5041.1 0.23 -0.6 4,781,920 - Xcc-8004.5041.1 0.23 +0.4 4,781,920 - Xcc-8004.5041.1 0.23 -1.0 4,781,920 - Xcc-8004.5041.1 0.23 +3.8 4,782,119 + Xcc-8004.5041.1 0.57 -1.4 4,782,120 - Xcc-8004.5041.1 0.57 +1.0 4,782,123 + Xcc-8004.5041.1 0.57 +0.1 4,782,123 + Xcc-8004.5041.1 0.57 -0.8 4,782,123 + Xcc-8004.5041.1 0.57 -0.2 4,782,123 + Xcc-8004.5041.1 0.57 -2.9 4,782,123 + Xcc-8004.5041.1 0.57 +2.6 4,782,123 + Xcc-8004.5041.1 0.57 +1.1 4,782,123 + Xcc-8004.5041.1 0.57 +1.4 4,782,124 - Xcc-8004.5041.1 0.57 -0.0 4,782,124 - Xcc-8004.5041.1 0.57 +0.5 4,782,124 - Xcc-8004.5041.1 0.57 -0.2 4,782,124 - Xcc-8004.5041.1 0.57 -0.2 4,782,124 - Xcc-8004.5041.1 0.57 +0.2 4,782,124 - Xcc-8004.5041.1 0.57 +1.2 4,782,124 - Xcc-8004.5041.1 0.57 -0.0 4,782,124 - Xcc-8004.5041.1 0.57 +0.7 4,782,124 - Xcc-8004.5041.1 0.57 +1.3 4,782,124 - Xcc-8004.5041.1 0.57 -0.7 4,782,153 + Xcc-8004.5041.1 0.62 +1.9 4,782,247 + Xcc-8004.5041.1 0.78 +2.6 4,782,270 + Xcc-8004.5041.1 0.82 -1.4 4,782,271 - Xcc-8004.5041.1 0.82 +1.7 4,782,271 - Xcc-8004.5041.1 0.82 -1.4 4,782,297 + Xcc-8004.5041.1 0.87 -0.5 4,782,561 + -0.3 4,782,561 + -1.2 4,782,562 - +0.9 4,782,562 - -0.3 4,782,725 + +0.1 4,782,725 + -0.3 4,782,726 - +0.0 4,782,867 - +0.0 4,782,867 - +2.4 4,782,875 + -0.7 4,782,876 - +0.1 4,782,876 - +1.2 4,783,126 + +0.5 4,783,126 + +1.3 4,783,126 + +1.5 4,783,126 + -2.0 4,783,126 + -0.9 4,783,126 + +0.2 4,783,127 - -1.4 4,783,127 - -0.1 4,783,127 - -1.5 4,783,127 - +1.3 4,783,127 - +0.5 4,783,127 - -1.8 4,783,127 - -0.7 4,783,127 - -0.6 4,783,179 + +0.0 4,783,180 - +1.6 4,783,184 + -0.1 4,783,184 + -1.1 4,783,184 + +0.4 4,783,184 + +0.4 4,783,184 + +1.3 4,783,184 + +1.0 4,783,185 - +1.3 4,783,185 - -0.1 4,783,185 - -2.5 4,783,185 - -0.7 4,783,185 - -1.9 4,783,185 - +0.2 4,783,185 - +0.5 4,783,379 + Xcc-8004.5044.1 0.18 -0.4 4,783,379 + Xcc-8004.5044.1 0.18 -0.6 4,783,380 - Xcc-8004.5044.1 0.18 -0.6 4,783,380 - Xcc-8004.5044.1 0.18 -0.4 4,783,469 + Xcc-8004.5044.1 0.27 +0.0 4,783,497 + Xcc-8004.5044.1 0.29 -1.7 4,783,498 - Xcc-8004.5044.1 0.29 -1.0 4,783,715 + Xcc-8004.5044.1 0.51 +0.6 4,783,715 + Xcc-8004.5044.1 0.51 +0.3 4,783,715 + Xcc-8004.5044.1 0.51 -0.7 4,783,716 - Xcc-8004.5044.1 0.51 -1.3 4,783,716 - Xcc-8004.5044.1 0.51 +0.3 4,783,716 - Xcc-8004.5044.1 0.51 +0.2 4,783,785 + Xcc-8004.5044.1 0.58 +0.7 4,783,785 + Xcc-8004.5044.1 0.58 -1.9 4,783,786 - Xcc-8004.5044.1 0.58 +0.4
Or see this region's nucleotide sequence