Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4554.1 and Xcc-8004.4555.1 are separated by 203 nucleotides Xcc-8004.4555.1 and Xcc-8004.4556.1 are separated by 40 nucleotides Xcc-8004.4556.1 and Xcc-8004.4557.1 are separated by 10 nucleotides
Xcc-8004.4554.1: Xcc-8004.4554.1 - Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] (EC 2.6.1.16), at 4,348,839 to 4,350,668
Xcc-8004.4554.1
Xcc-8004.4555.1: Xcc-8004.4555.1 - ABC transporter permease, at 4,350,872 to 4,352,143
Xcc-8004.4555.1
Xcc-8004.4556.1: Xcc-8004.4556.1 - Lipoprotein releasing system ATP-binding protein LolD, at 4,352,184 to 4,352,903
Xcc-8004.4556.1
Xcc-8004.4557.1: Xcc-8004.4557.1 - ABC transporter ATP-binding protein, at 4,352,914 to 4,354,206
Xcc-8004.4557.1
Position (kb) 4350
4351
4352
4353 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4350.813 kb on - strand at 4350.903 kb on + strand at 4351.127 kb on + strand, within Xcc-8004.4555.1 at 4351.128 kb on - strand, within Xcc-8004.4555.1 at 4351.128 kb on - strand, within Xcc-8004.4555.1 at 4351.128 kb on - strand, within Xcc-8004.4555.1 at 4351.379 kb on + strand, within Xcc-8004.4555.1 at 4351.380 kb on - strand, within Xcc-8004.4555.1 at 4351.391 kb on + strand, within Xcc-8004.4555.1 at 4351.979 kb on + strand, within Xcc-8004.4555.1 at 4351.979 kb on + strand, within Xcc-8004.4555.1 at 4351.980 kb on - strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.985 kb on + strand, within Xcc-8004.4555.1 at 4351.986 kb on - strand, within Xcc-8004.4555.1 at 4352.368 kb on - strand, within Xcc-8004.4556.1 at 4352.368 kb on - strand, within Xcc-8004.4556.1 at 4352.731 kb on + strand, within Xcc-8004.4556.1 at 4352.924 kb on - strand at 4352.926 kb on + strand at 4352.927 kb on - strand at 4352.927 kb on - strand at 4352.927 kb on - strand at 4353.038 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,350,813 - -0.1 4,350,903 + +0.3 4,351,127 + Xcc-8004.4555.1 0.20 -1.8 4,351,128 - Xcc-8004.4555.1 0.20 +0.6 4,351,128 - Xcc-8004.4555.1 0.20 +0.8 4,351,128 - Xcc-8004.4555.1 0.20 +0.7 4,351,379 + Xcc-8004.4555.1 0.40 +2.1 4,351,380 - Xcc-8004.4555.1 0.40 -0.7 4,351,391 + Xcc-8004.4555.1 0.41 +1.0 4,351,979 + Xcc-8004.4555.1 0.87 -1.1 4,351,979 + Xcc-8004.4555.1 0.87 +1.8 4,351,980 - Xcc-8004.4555.1 0.87 -0.2 4,351,985 + Xcc-8004.4555.1 0.88 -0.2 4,351,985 + Xcc-8004.4555.1 0.88 -0.1 4,351,985 + Xcc-8004.4555.1 0.88 -1.4 4,351,985 + Xcc-8004.4555.1 0.88 -1.6 4,351,986 - Xcc-8004.4555.1 0.88 -3.1 4,352,368 - Xcc-8004.4556.1 0.26 -1.2 4,352,368 - Xcc-8004.4556.1 0.26 -2.0 4,352,731 + Xcc-8004.4556.1 0.76 -0.5 4,352,924 - +1.1 4,352,926 + +0.8 4,352,927 - +1.1 4,352,927 - -0.0 4,352,927 - +3.8 4,353,038 - -3.2
Or see this region's nucleotide sequence