Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4549.1 and Xcc-8004.4551.1 are separated by 359 nucleotides Xcc-8004.4551.1 and Xcc-8004.4553.1 are separated by 231 nucleotides
Xcc-8004.4549.1: Xcc-8004.4549.1 - FIG01209832: hypothetical protein, at 4,344,387 to 4,346,285
Xcc-8004.4549.1
Xcc-8004.4551.1: Xcc-8004.4551.1 - FIG01211963: hypothetical protein, at 4,346,645 to 4,347,799
Xcc-8004.4551.1
Xcc-8004.4553.1: Xcc-8004.4553.1 - FIG01211682: hypothetical protein, at 4,348,031 to 4,348,546
Xcc-8004.4553.1
Position (kb) 4346
4347
4348 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4345.746 kb on + strand, within Xcc-8004.4549.1 at 4345.747 kb on - strand, within Xcc-8004.4549.1 at 4345.941 kb on + strand, within Xcc-8004.4549.1 at 4345.941 kb on + strand, within Xcc-8004.4549.1 at 4345.941 kb on + strand, within Xcc-8004.4549.1 at 4346.108 kb on - strand at 4346.145 kb on + strand at 4346.146 kb on - strand at 4346.179 kb on + strand at 4346.180 kb on - strand at 4346.236 kb on + strand at 4346.236 kb on + strand at 4346.237 kb on - strand at 4346.261 kb on + strand at 4346.261 kb on + strand at 4346.262 kb on - strand at 4346.286 kb on + strand at 4346.286 kb on + strand at 4346.287 kb on - strand at 4346.287 kb on - strand at 4346.287 kb on - strand at 4346.331 kb on + strand at 4346.332 kb on - strand at 4346.337 kb on + strand at 4346.338 kb on - strand at 4346.352 kb on - strand at 4346.352 kb on - strand at 4346.485 kb on + strand at 4346.494 kb on + strand at 4346.494 kb on + strand at 4346.507 kb on + strand at 4346.507 kb on + strand at 4346.508 kb on - strand at 4346.508 kb on - strand at 4346.524 kb on + strand at 4346.546 kb on + strand at 4346.547 kb on - strand at 4346.547 kb on - strand at 4346.547 kb on - strand at 4346.588 kb on + strand at 4346.589 kb on - strand at 4346.589 kb on - strand at 4346.589 kb on - strand at 4346.597 kb on + strand at 4346.598 kb on - strand at 4346.634 kb on + strand at 4346.635 kb on - strand at 4346.635 kb on - strand at 4346.637 kb on + strand at 4346.637 kb on + strand at 4346.638 kb on - strand at 4346.638 kb on - strand at 4346.638 kb on - strand at 4346.638 kb on - strand at 4346.638 kb on - strand at 4346.647 kb on - strand at 4346.647 kb on - strand at 4346.727 kb on + strand at 4346.728 kb on - strand at 4346.728 kb on - strand at 4346.757 kb on + strand at 4346.757 kb on + strand at 4346.757 kb on + strand at 4346.758 kb on - strand at 4346.758 kb on - strand at 4346.758 kb on - strand at 4346.780 kb on + strand, within Xcc-8004.4551.1 at 4346.780 kb on + strand, within Xcc-8004.4551.1 at 4346.780 kb on + strand, within Xcc-8004.4551.1 at 4346.780 kb on + strand, within Xcc-8004.4551.1 at 4346.781 kb on - strand, within Xcc-8004.4551.1 at 4346.877 kb on + strand, within Xcc-8004.4551.1 at 4346.877 kb on + strand, within Xcc-8004.4551.1 at 4346.878 kb on - strand, within Xcc-8004.4551.1 at 4346.889 kb on + strand, within Xcc-8004.4551.1 at 4346.890 kb on - strand, within Xcc-8004.4551.1 at 4346.919 kb on + strand, within Xcc-8004.4551.1 at 4346.919 kb on + strand, within Xcc-8004.4551.1 at 4346.919 kb on + strand, within Xcc-8004.4551.1 at 4346.920 kb on - strand, within Xcc-8004.4551.1 at 4347.013 kb on + strand, within Xcc-8004.4551.1 at 4347.013 kb on + strand, within Xcc-8004.4551.1 at 4347.039 kb on + strand, within Xcc-8004.4551.1 at 4347.039 kb on + strand, within Xcc-8004.4551.1 at 4347.040 kb on - strand, within Xcc-8004.4551.1 at 4347.040 kb on - strand, within Xcc-8004.4551.1 at 4347.088 kb on + strand, within Xcc-8004.4551.1 at 4347.089 kb on - strand, within Xcc-8004.4551.1 at 4347.096 kb on - strand, within Xcc-8004.4551.1 at 4347.117 kb on + strand, within Xcc-8004.4551.1 at 4347.118 kb on - strand, within Xcc-8004.4551.1 at 4347.227 kb on + strand, within Xcc-8004.4551.1 at 4347.228 kb on - strand, within Xcc-8004.4551.1 at 4347.228 kb on - strand, within Xcc-8004.4551.1 at 4347.320 kb on - strand, within Xcc-8004.4551.1 at 4347.349 kb on + strand, within Xcc-8004.4551.1 at 4347.372 kb on + strand, within Xcc-8004.4551.1 at 4347.372 kb on + strand, within Xcc-8004.4551.1 at 4347.448 kb on + strand, within Xcc-8004.4551.1 at 4347.449 kb on - strand, within Xcc-8004.4551.1 at 4347.449 kb on - strand, within Xcc-8004.4551.1 at 4347.528 kb on + strand, within Xcc-8004.4551.1 at 4347.528 kb on + strand, within Xcc-8004.4551.1 at 4347.667 kb on - strand, within Xcc-8004.4551.1 at 4347.667 kb on - strand, within Xcc-8004.4551.1 at 4347.672 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.678 kb on + strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.679 kb on - strand, within Xcc-8004.4551.1 at 4347.727 kb on - strand at 4347.949 kb on + strand at 4347.949 kb on + strand at 4347.949 kb on + strand at 4347.950 kb on - strand at 4347.950 kb on - strand at 4347.950 kb on - strand at 4348.114 kb on - strand, within Xcc-8004.4553.1 at 4348.203 kb on + strand, within Xcc-8004.4553.1 at 4348.203 kb on + strand, within Xcc-8004.4553.1 at 4348.204 kb on - strand, within Xcc-8004.4553.1 at 4348.204 kb on - strand, within Xcc-8004.4553.1 at 4348.398 kb on + strand, within Xcc-8004.4553.1 at 4348.546 kb on + strand at 4348.588 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.612 kb on - strand at 4348.692 kb on - strand at 4348.710 kb on - strand at 4348.710 kb on - strand at 4348.710 kb on - strand at 4348.720 kb on + strand at 4348.720 kb on + strand at 4348.781 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 4,345,746 + Xcc-8004.4549.1 0.72 -2.2 4,345,747 - Xcc-8004.4549.1 0.72 -0.4 4,345,941 + Xcc-8004.4549.1 0.82 +0.1 4,345,941 + Xcc-8004.4549.1 0.82 +1.3 4,345,941 + Xcc-8004.4549.1 0.82 +1.7 4,346,108 - -0.5 4,346,145 + -1.6 4,346,146 - +1.7 4,346,179 + -2.0 4,346,180 - +0.2 4,346,236 + -0.6 4,346,236 + -0.5 4,346,237 - -0.1 4,346,261 + -0.4 4,346,261 + -0.0 4,346,262 - -0.3 4,346,286 + +0.1 4,346,286 + -1.1 4,346,287 - -1.0 4,346,287 - +0.0 4,346,287 - -0.2 4,346,331 + +1.5 4,346,332 - -0.0 4,346,337 + +1.5 4,346,338 - +0.4 4,346,352 - -1.1 4,346,352 - +0.2 4,346,485 + +1.2 4,346,494 + +0.6 4,346,494 + -2.1 4,346,507 + -0.7 4,346,507 + -1.1 4,346,508 - -0.8 4,346,508 - -0.9 4,346,524 + -0.7 4,346,546 + -1.8 4,346,547 - +0.2 4,346,547 - -0.4 4,346,547 - -0.7 4,346,588 + +0.3 4,346,589 - +0.8 4,346,589 - -0.2 4,346,589 - +1.0 4,346,597 + -0.7 4,346,598 - +1.4 4,346,634 + -0.7 4,346,635 - -0.1 4,346,635 - +1.1 4,346,637 + +0.5 4,346,637 + -0.4 4,346,638 - +0.7 4,346,638 - -1.2 4,346,638 - -0.2 4,346,638 - +1.2 4,346,638 - -0.1 4,346,647 - -0.2 4,346,647 - -2.8 4,346,727 + +0.3 4,346,728 - +1.1 4,346,728 - +0.7 4,346,757 + -1.8 4,346,757 + -1.0 4,346,757 + -0.7 4,346,758 - +0.4 4,346,758 - -0.5 4,346,758 - +0.5 4,346,780 + Xcc-8004.4551.1 0.12 +1.3 4,346,780 + Xcc-8004.4551.1 0.12 -0.3 4,346,780 + Xcc-8004.4551.1 0.12 -0.3 4,346,780 + Xcc-8004.4551.1 0.12 +0.0 4,346,781 - Xcc-8004.4551.1 0.12 -0.1 4,346,877 + Xcc-8004.4551.1 0.20 -1.8 4,346,877 + Xcc-8004.4551.1 0.20 -1.2 4,346,878 - Xcc-8004.4551.1 0.20 -0.8 4,346,889 + Xcc-8004.4551.1 0.21 +1.5 4,346,890 - Xcc-8004.4551.1 0.21 -1.3 4,346,919 + Xcc-8004.4551.1 0.24 -1.2 4,346,919 + Xcc-8004.4551.1 0.24 -0.7 4,346,919 + Xcc-8004.4551.1 0.24 -0.7 4,346,920 - Xcc-8004.4551.1 0.24 +0.1 4,347,013 + Xcc-8004.4551.1 0.32 +1.8 4,347,013 + Xcc-8004.4551.1 0.32 +1.5 4,347,039 + Xcc-8004.4551.1 0.34 +0.3 4,347,039 + Xcc-8004.4551.1 0.34 +0.9 4,347,040 - Xcc-8004.4551.1 0.34 -0.7 4,347,040 - Xcc-8004.4551.1 0.34 +3.3 4,347,088 + Xcc-8004.4551.1 0.38 -0.3 4,347,089 - Xcc-8004.4551.1 0.38 +0.1 4,347,096 - Xcc-8004.4551.1 0.39 -0.5 4,347,117 + Xcc-8004.4551.1 0.41 +1.1 4,347,118 - Xcc-8004.4551.1 0.41 -0.6 4,347,227 + Xcc-8004.4551.1 0.50 +1.7 4,347,228 - Xcc-8004.4551.1 0.50 -0.7 4,347,228 - Xcc-8004.4551.1 0.50 +3.8 4,347,320 - Xcc-8004.4551.1 0.58 -1.2 4,347,349 + Xcc-8004.4551.1 0.61 +0.3 4,347,372 + Xcc-8004.4551.1 0.63 +0.2 4,347,372 + Xcc-8004.4551.1 0.63 -0.1 4,347,448 + Xcc-8004.4551.1 0.70 -2.1 4,347,449 - Xcc-8004.4551.1 0.70 +1.0 4,347,449 - Xcc-8004.4551.1 0.70 +0.3 4,347,528 + Xcc-8004.4551.1 0.76 -0.1 4,347,528 + Xcc-8004.4551.1 0.76 -0.7 4,347,667 - Xcc-8004.4551.1 0.88 +0.0 4,347,667 - Xcc-8004.4551.1 0.88 +0.7 4,347,672 + Xcc-8004.4551.1 0.89 +0.3 4,347,678 + Xcc-8004.4551.1 0.89 +0.2 4,347,678 + Xcc-8004.4551.1 0.89 +0.7 4,347,678 + Xcc-8004.4551.1 0.89 +4.9 4,347,679 - Xcc-8004.4551.1 0.90 -0.7 4,347,679 - Xcc-8004.4551.1 0.90 +0.0 4,347,679 - Xcc-8004.4551.1 0.90 -0.2 4,347,679 - Xcc-8004.4551.1 0.90 -1.1 4,347,679 - Xcc-8004.4551.1 0.90 +0.7 4,347,679 - Xcc-8004.4551.1 0.90 -0.7 4,347,679 - Xcc-8004.4551.1 0.90 -1.4 4,347,727 - +0.6 4,347,949 + +0.5 4,347,949 + +0.9 4,347,949 + +2.1 4,347,950 - +1.7 4,347,950 - -1.0 4,347,950 - +0.2 4,348,114 - Xcc-8004.4553.1 0.16 -0.3 4,348,203 + Xcc-8004.4553.1 0.33 -0.2 4,348,203 + Xcc-8004.4553.1 0.33 +0.5 4,348,204 - Xcc-8004.4553.1 0.34 -1.3 4,348,204 - Xcc-8004.4553.1 0.34 -0.2 4,348,398 + Xcc-8004.4553.1 0.71 +0.1 4,348,546 + +0.2 4,348,588 - -0.0 4,348,612 - -0.7 4,348,612 - +0.7 4,348,612 - -2.3 4,348,612 - +1.2 4,348,692 - -1.0 4,348,710 - -0.5 4,348,710 - +0.8 4,348,710 - -0.3 4,348,720 + -1.3 4,348,720 + -0.5 4,348,781 - -0.1
Or see this region's nucleotide sequence