Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.409.1 and Xcc-8004.410.1 are separated by 303 nucleotides Xcc-8004.410.1 and Xcc-8004.411.1 overlap by 4 nucleotides Xcc-8004.411.1 and Xcc-8004.412.1 are separated by 19 nucleotides Xcc-8004.412.1 and Xcc-8004.413.1 overlap by 4 nucleotides
Xcc-8004.409.1: Xcc-8004.409.1 - hypothetical protein, at 396,225 to 396,419
Xcc-8004.409.1
Xcc-8004.410.1: Xcc-8004.410.1 - putative; ORF located using Glimmer/Genemark, at 396,723 to 397,223
Xcc-8004.410.1
Xcc-8004.411.1: Xcc-8004.411.1 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 397,220 to 399,331
Xcc-8004.411.1
Xcc-8004.412.1: Xcc-8004.412.1 - Putative protein-S-isoprenylcysteine methyltransferase, at 399,351 to 399,899
Xcc-8004.412.1
Xcc-8004.413.1: Xcc-8004.413.1 - FIG01211305: hypothetical protein, at 399,896 to 400,438
Xcc-8004.413.1
Position (kb) 397
398
399
400 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.228 kb on + strand at 396.229 kb on - strand at 396.229 kb on - strand at 396.307 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.385 kb on - strand, within Xcc-8004.409.1 at 396.396 kb on + strand, within Xcc-8004.409.1 at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.440 kb on + strand at 396.441 kb on - strand at 396.558 kb on + strand at 396.558 kb on + strand at 396.649 kb on + strand at 396.730 kb on + strand at 397.041 kb on + strand, within Xcc-8004.410.1 at 397.081 kb on - strand, within Xcc-8004.410.1 at 397.268 kb on + strand at 397.269 kb on - strand at 397.323 kb on + strand at 397.323 kb on + strand at 397.323 kb on + strand at 397.324 kb on - strand at 397.324 kb on - strand at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.562 kb on + strand, within Xcc-8004.411.1 at 397.563 kb on - strand, within Xcc-8004.411.1 at 397.563 kb on - strand, within Xcc-8004.411.1 at 397.563 kb on - strand, within Xcc-8004.411.1 at 397.628 kb on + strand, within Xcc-8004.411.1 at 397.628 kb on + strand, within Xcc-8004.411.1 at 397.628 kb on + strand, within Xcc-8004.411.1 at 397.709 kb on + strand, within Xcc-8004.411.1 at 398.934 kb on + strand, within Xcc-8004.411.1 at 399.192 kb on + strand at 399.192 kb on + strand at 399.349 kb on + strand at 399.385 kb on + strand at 399.386 kb on - strand at 399.457 kb on + strand, within Xcc-8004.412.1 at 399.458 kb on - strand, within Xcc-8004.412.1 at 399.458 kb on - strand, within Xcc-8004.412.1 at 399.458 kb on - strand, within Xcc-8004.412.1 at 399.535 kb on + strand, within Xcc-8004.412.1 at 399.535 kb on + strand, within Xcc-8004.412.1 at 399.536 kb on - strand, within Xcc-8004.412.1 at 399.536 kb on - strand, within Xcc-8004.412.1 at 399.553 kb on + strand, within Xcc-8004.412.1 at 399.554 kb on - strand, within Xcc-8004.412.1 at 399.767 kb on + strand, within Xcc-8004.412.1 at 399.926 kb on + strand at 399.926 kb on + strand at 399.926 kb on + strand at 399.996 kb on + strand, within Xcc-8004.413.1 at 399.996 kb on + strand, within Xcc-8004.413.1 at 400.086 kb on + strand, within Xcc-8004.413.1 at 400.086 kb on + strand, within Xcc-8004.413.1 at 400.087 kb on - strand, within Xcc-8004.413.1 at 400.087 kb on - strand, within Xcc-8004.413.1 at 400.211 kb on + strand, within Xcc-8004.413.1 at 400.211 kb on + strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.212 kb on - strand, within Xcc-8004.413.1 at 400.264 kb on + strand, within Xcc-8004.413.1 at 400.264 kb on + strand, within Xcc-8004.413.1 at 400.265 kb on - strand, within Xcc-8004.413.1 at 400.317 kb on + strand, within Xcc-8004.413.1 at 400.318 kb on - strand, within Xcc-8004.413.1 at 400.318 kb on - strand, within Xcc-8004.413.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 396,228 + +1.2 396,228 + +0.7 396,228 + +2.4 396,228 + +1.1 396,228 + -1.5 396,228 + +0.5 396,228 + -1.3 396,229 - -0.7 396,229 - +0.4 396,307 - Xcc-8004.409.1 0.42 +0.2 396,385 - Xcc-8004.409.1 0.82 -0.3 396,385 - Xcc-8004.409.1 0.82 -0.5 396,385 - Xcc-8004.409.1 0.82 -0.4 396,396 + Xcc-8004.409.1 0.88 -1.1 396,440 + +0.1 396,440 + -0.4 396,440 + -0.9 396,440 + +0.6 396,440 + -1.8 396,441 - -0.1 396,558 + -0.2 396,558 + -0.1 396,649 + -0.1 396,730 + -1.2 397,041 + Xcc-8004.410.1 0.63 +0.0 397,081 - Xcc-8004.410.1 0.71 -0.3 397,268 + +1.6 397,269 - -0.7 397,323 + -0.0 397,323 + -0.4 397,323 + -0.4 397,324 - +0.7 397,324 - -1.2 397,562 + Xcc-8004.411.1 0.16 -1.3 397,562 + Xcc-8004.411.1 0.16 +0.2 397,562 + Xcc-8004.411.1 0.16 -0.7 397,562 + Xcc-8004.411.1 0.16 +0.5 397,562 + Xcc-8004.411.1 0.16 +0.2 397,562 + Xcc-8004.411.1 0.16 -0.2 397,563 - Xcc-8004.411.1 0.16 +0.2 397,563 - Xcc-8004.411.1 0.16 -1.1 397,563 - Xcc-8004.411.1 0.16 -1.8 397,628 + Xcc-8004.411.1 0.19 -0.9 397,628 + Xcc-8004.411.1 0.19 -1.7 397,628 + Xcc-8004.411.1 0.19 -0.6 397,709 + Xcc-8004.411.1 0.23 -0.3 398,934 + Xcc-8004.411.1 0.81 -0.1 399,192 + -0.1 399,192 + +1.6 399,349 + +1.3 399,385 + +0.1 399,386 - +1.5 399,457 + Xcc-8004.412.1 0.19 -2.8 399,458 - Xcc-8004.412.1 0.19 -2.5 399,458 - Xcc-8004.412.1 0.19 -0.6 399,458 - Xcc-8004.412.1 0.19 -0.1 399,535 + Xcc-8004.412.1 0.34 -1.4 399,535 + Xcc-8004.412.1 0.34 -2.6 399,536 - Xcc-8004.412.1 0.34 -0.3 399,536 - Xcc-8004.412.1 0.34 -0.2 399,553 + Xcc-8004.412.1 0.37 -2.1 399,554 - Xcc-8004.412.1 0.37 +0.4 399,767 + Xcc-8004.412.1 0.76 +0.1 399,926 + +0.0 399,926 + +0.1 399,926 + -0.7 399,996 + Xcc-8004.413.1 0.18 -0.7 399,996 + Xcc-8004.413.1 0.18 +0.2 400,086 + Xcc-8004.413.1 0.35 +0.2 400,086 + Xcc-8004.413.1 0.35 +1.0 400,087 - Xcc-8004.413.1 0.35 -0.2 400,087 - Xcc-8004.413.1 0.35 +1.7 400,211 + Xcc-8004.413.1 0.58 +0.7 400,211 + Xcc-8004.413.1 0.58 +0.4 400,212 - Xcc-8004.413.1 0.58 +2.1 400,212 - Xcc-8004.413.1 0.58 -0.7 400,212 - Xcc-8004.413.1 0.58 -2.6 400,264 + Xcc-8004.413.1 0.68 -1.8 400,264 + Xcc-8004.413.1 0.68 +1.4 400,265 - Xcc-8004.413.1 0.68 -1.3 400,317 + Xcc-8004.413.1 0.78 -0.3 400,318 - Xcc-8004.413.1 0.78 -0.4 400,318 - Xcc-8004.413.1 0.78 -0.8
Or see this region's nucleotide sequence