Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3540.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3539.1 and Xcc-8004.3540.1 are separated by 39 nucleotidesXcc-8004.3540.1 and Xcc-8004.3541.1 overlap by 4 nucleotidesXcc-8004.3541.1 and Xcc-8004.3542.1 overlap by 4 nucleotides Xcc-8004.3539.1: Xcc-8004.3539.1 - N-succinyl-L,L-diaminopimelate desuccinylase (EC 3.5.1.18), at 3,430,819 to 3,432,018 Xcc-8004.3539.1 Xcc-8004.3540.1: Xcc-8004.3540.1 - FIG138056: a glutathione-dependent thiol reductase, at 3,432,058 to 3,432,414 Xcc-8004.3540.1 Xcc-8004.3541.1: Xcc-8004.3541.1 - putative; ORF located using Glimmer/Genemark, at 3,432,411 to 3,432,884 Xcc-8004.3541.1 Xcc-8004.3542.1: Xcc-8004.3542.1 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (EC 2.3.1.117), at 3,432,881 to 3,434,053 Xcc-8004.3542.1 Position (kb) 3432 3433Strain fitness (log2 ratio) -2 -1 0 1 2at 3432.335 kb on + strand, within Xcc-8004.3540.1at 3432.382 kb on - strandat 3432.403 kb on + strandat 3432.404 kb on - strandat 3432.404 kb on - strandat 3432.465 kb on - strand, within Xcc-8004.3541.1at 3432.686 kb on - strand, within Xcc-8004.3541.1at 3432.781 kb on + strand, within Xcc-8004.3541.1at 3432.781 kb on + strand, within Xcc-8004.3541.1at 3432.782 kb on - strand, within Xcc-8004.3541.1at 3432.782 kb on - strand, within Xcc-8004.3541.1at 3432.782 kb on - strand, within Xcc-8004.3541.1at 3432.878 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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3,432,335 + Xcc-8004.3540.1 0.78 -2.5
3,432,382 - +0.2
3,432,403 + -0.0
3,432,404 - +0.4
3,432,404 - -0.6
3,432,465 - Xcc-8004.3541.1 0.11 +1.8
3,432,686 - Xcc-8004.3541.1 0.58 +1.7
3,432,781 + Xcc-8004.3541.1 0.78 +0.7
3,432,781 + Xcc-8004.3541.1 0.78 +0.3
3,432,782 - Xcc-8004.3541.1 0.78 -0.1
3,432,782 - Xcc-8004.3541.1 0.78 -2.3
3,432,782 - Xcc-8004.3541.1 0.78 -0.1
3,432,878 + -1.4

Or see this region's nucleotide sequence