Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3329.1 and Xcc-8004.3330.1 overlap by 4 nucleotides Xcc-8004.3330.1 and Xcc-8004.3331.1 are separated by 112 nucleotides Xcc-8004.3331.1 and Xcc-8004.3332.1 are separated by 36 nucleotides Xcc-8004.3332.1 and Xcc-8004.3333.1 overlap by 4 nucleotides
Xcc-8004.3329.1: Xcc-8004.3329.1 - Exodeoxyribonuclease I (EC 3.1.11.1), at 3,229,062 to 3,230,507
Xcc-8004.3329.1
Xcc-8004.3330.1: Xcc-8004.3330.1 - FIG01212834: hypothetical protein, at 3,230,504 to 3,231,190
Xcc-8004.3330.1
Xcc-8004.3331.1: Xcc-8004.3331.1 - FIG01210780: hypothetical protein, at 3,231,303 to 3,231,875
Xcc-8004.3331.1
Xcc-8004.3332.1: Xcc-8004.3332.1 - Spermidine synthase (EC 2.5.1.16), at 3,231,912 to 3,232,655
Xcc-8004.3332.1
Xcc-8004.3333.1: Xcc-8004.3333.1 - 5'-nucleotidase (EC 3.1.3.5), at 3,232,652 to 3,233,617
Xcc-8004.3333.1
Position (kb) 3231
3232 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 3230.340 kb on + strand, within Xcc-8004.3329.1 at 3230.444 kb on + strand at 3230.445 kb on - strand at 3230.504 kb on - strand at 3230.514 kb on - strand at 3230.514 kb on - strand at 3230.720 kb on + strand, within Xcc-8004.3330.1 at 3230.720 kb on + strand, within Xcc-8004.3330.1 at 3230.721 kb on - strand, within Xcc-8004.3330.1 at 3230.721 kb on - strand, within Xcc-8004.3330.1 at 3230.822 kb on + strand, within Xcc-8004.3330.1 at 3230.822 kb on + strand, within Xcc-8004.3330.1 at 3230.823 kb on - strand, within Xcc-8004.3330.1 at 3231.065 kb on + strand, within Xcc-8004.3330.1 at 3231.065 kb on + strand, within Xcc-8004.3330.1 at 3231.272 kb on + strand at 3231.272 kb on + strand at 3231.272 kb on + strand at 3231.272 kb on + strand at 3231.375 kb on + strand, within Xcc-8004.3331.1 at 3231.376 kb on - strand, within Xcc-8004.3331.1 at 3231.489 kb on + strand, within Xcc-8004.3331.1 at 3231.490 kb on - strand, within Xcc-8004.3331.1 at 3231.675 kb on + strand, within Xcc-8004.3331.1 at 3231.675 kb on + strand, within Xcc-8004.3331.1 at 3231.913 kb on + strand at 3232.037 kb on + strand, within Xcc-8004.3332.1 at 3232.205 kb on - strand, within Xcc-8004.3332.1 at 3232.205 kb on - strand, within Xcc-8004.3332.1 at 3232.249 kb on + strand, within Xcc-8004.3332.1 at 3232.250 kb on - strand, within Xcc-8004.3332.1 at 3232.263 kb on + strand, within Xcc-8004.3332.1 at 3232.263 kb on + strand, within Xcc-8004.3332.1 at 3232.264 kb on - strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.273 kb on + strand, within Xcc-8004.3332.1 at 3232.492 kb on - strand, within Xcc-8004.3332.1 at 3232.520 kb on + strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.521 kb on - strand, within Xcc-8004.3332.1 at 3232.522 kb on + strand, within Xcc-8004.3332.1 at 3232.759 kb on + strand, within Xcc-8004.3333.1 at 3232.760 kb on - strand, within Xcc-8004.3333.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 3,230,340 + Xcc-8004.3329.1 0.88 -1.1 3,230,444 + -1.2 3,230,445 - +0.3 3,230,504 - -0.7 3,230,514 - +0.5 3,230,514 - -1.0 3,230,720 + Xcc-8004.3330.1 0.31 -2.0 3,230,720 + Xcc-8004.3330.1 0.31 -0.0 3,230,721 - Xcc-8004.3330.1 0.32 +0.5 3,230,721 - Xcc-8004.3330.1 0.32 -2.4 3,230,822 + Xcc-8004.3330.1 0.46 -0.5 3,230,822 + Xcc-8004.3330.1 0.46 +0.1 3,230,823 - Xcc-8004.3330.1 0.46 +0.0 3,231,065 + Xcc-8004.3330.1 0.82 -1.3 3,231,065 + Xcc-8004.3330.1 0.82 -2.3 3,231,272 + +0.7 3,231,272 + +0.6 3,231,272 + -0.0 3,231,272 + +0.8 3,231,375 + Xcc-8004.3331.1 0.13 +1.0 3,231,376 - Xcc-8004.3331.1 0.13 -0.1 3,231,489 + Xcc-8004.3331.1 0.32 +0.7 3,231,490 - Xcc-8004.3331.1 0.33 +3.1 3,231,675 + Xcc-8004.3331.1 0.65 -0.3 3,231,675 + Xcc-8004.3331.1 0.65 +0.0 3,231,913 + +0.2 3,232,037 + Xcc-8004.3332.1 0.17 +0.8 3,232,205 - Xcc-8004.3332.1 0.39 -0.6 3,232,205 - Xcc-8004.3332.1 0.39 +1.5 3,232,249 + Xcc-8004.3332.1 0.45 +0.3 3,232,250 - Xcc-8004.3332.1 0.45 +0.2 3,232,263 + Xcc-8004.3332.1 0.47 -1.9 3,232,263 + Xcc-8004.3332.1 0.47 +0.4 3,232,264 - Xcc-8004.3332.1 0.47 -0.6 3,232,273 + Xcc-8004.3332.1 0.49 +0.0 3,232,273 + Xcc-8004.3332.1 0.49 -0.9 3,232,273 + Xcc-8004.3332.1 0.49 +1.5 3,232,492 - Xcc-8004.3332.1 0.78 +0.1 3,232,520 + Xcc-8004.3332.1 0.82 -1.8 3,232,521 - Xcc-8004.3332.1 0.82 -0.7 3,232,521 - Xcc-8004.3332.1 0.82 -0.0 3,232,521 - Xcc-8004.3332.1 0.82 +0.6 3,232,521 - Xcc-8004.3332.1 0.82 -0.6 3,232,522 + Xcc-8004.3332.1 0.82 +1.0 3,232,759 + Xcc-8004.3333.1 0.11 -0.9 3,232,760 - Xcc-8004.3333.1 0.11 +0.2
Or see this region's nucleotide sequence