Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3044.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Xylemvessel barcodes Location 2 4 dpi (25 plantes)
2,973,919	+		Xcc-8004.3043.1	0.54	-0.8
2,973,919	+		Xcc-8004.3043.1	0.54	+0.1
2,973,919	+		Xcc-8004.3043.1	0.54	-2.2
2,973,920	-		Xcc-8004.3043.1	0.54	-0.1
2,974,008	-		Xcc-8004.3043.1	0.59	+0.1
2,974,008	-		Xcc-8004.3043.1	0.59	+0.3
2,974,059	+		Xcc-8004.3043.1	0.62	-0.3
2,974,402	+		Xcc-8004.3043.1	0.80	-0.6
2,974,402	+		Xcc-8004.3043.1	0.80	-0.1
2,974,403	-		Xcc-8004.3043.1	0.80	+1.9
2,974,431	-		Xcc-8004.3043.1	0.82	+0.1
2,974,445	+		Xcc-8004.3043.1	0.83	+0.3
2,974,446	-		Xcc-8004.3043.1	0.83	+0.1
2,974,446	-		Xcc-8004.3043.1	0.83	-0.0
2,974,607	+				+1.3
2,974,607	+				-1.1
2,974,607	+				-1.3
2,974,608	-				+0.2
2,974,608	-				+1.4
2,974,709	+				+1.7
2,974,820	+				+1.3
2,974,820	+				-2.1
2,974,821	-				-0.0
2,974,821	-				-0.3
2,974,821	-				-2.5
2,974,821	-				-1.2
2,974,821	-				+0.1
2,974,821	-				+0.7
2,974,824	+				-0.5
2,974,824	+				-0.7
2,974,825	-				-2.4
2,974,825	-				+0.8
2,974,825	-				+0.8
2,974,825	-				-0.1
2,974,825	-				+0.8
2,974,825	-				+1.0
2,974,865	+				-0.5
2,974,866	-				-1.0
2,974,866	-				-1.1
2,975,023	+		Xcc-8004.3044.1	0.11	-0.2
2,975,175	+		Xcc-8004.3044.1	0.21	-0.1
2,975,346	+		Xcc-8004.3044.1	0.32	-0.1
2,975,346	+		Xcc-8004.3044.1	0.32	+0.8
2,975,463	-		Xcc-8004.3044.1	0.39	-0.1
2,975,463	-		Xcc-8004.3044.1	0.39	-2.7
2,975,621	+		Xcc-8004.3044.1	0.49	+0.6
2,975,621	+		Xcc-8004.3044.1	0.49	-0.0
2,975,621	+		Xcc-8004.3044.1	0.49	-0.0
2,975,622	-		Xcc-8004.3044.1	0.49	-0.6
2,975,622	-		Xcc-8004.3044.1	0.49	-2.4
2,975,622	-		Xcc-8004.3044.1	0.49	-1.0
2,975,622	-		Xcc-8004.3044.1	0.49	-0.3
2,975,622	-		Xcc-8004.3044.1	0.49	-0.9
2,975,639	+		Xcc-8004.3044.1	0.51	+1.1
2,975,640	-		Xcc-8004.3044.1	0.51	+0.7
2,975,640	-		Xcc-8004.3044.1	0.51	+0.5
2,975,640	-		Xcc-8004.3044.1	0.51	+1.0
2,975,640	-		Xcc-8004.3044.1	0.51	-0.7
2,975,640	-		Xcc-8004.3044.1	0.51	-0.3
2,975,699	+		Xcc-8004.3044.1	0.54	+0.5
2,975,699	+		Xcc-8004.3044.1	0.54	-0.6
2,975,699	+		Xcc-8004.3044.1	0.54	+1.3
2,975,699	+		Xcc-8004.3044.1	0.54	+0.4
2,975,699	+		Xcc-8004.3044.1	0.54	-1.3
2,975,700	-		Xcc-8004.3044.1	0.54	+2.2
2,975,892	-		Xcc-8004.3044.1	0.67	-1.4
2,975,892	-		Xcc-8004.3044.1	0.67	-0.4
2,975,892	-		Xcc-8004.3044.1	0.67	+1.0
2,975,900	+		Xcc-8004.3044.1	0.67	-0.7
2,975,900	+		Xcc-8004.3044.1	0.67	-2.0
2,975,900	+		Xcc-8004.3044.1	0.67	-0.7
2,975,900	+		Xcc-8004.3044.1	0.67	+0.0
2,975,900	+		Xcc-8004.3044.1	0.67	-0.9
2,975,900	+		Xcc-8004.3044.1	0.67	-0.1
2,975,900	+		Xcc-8004.3044.1	0.67	+0.3
2,975,901	-		Xcc-8004.3044.1	0.67	-1.0
2,975,901	-		Xcc-8004.3044.1	0.67	+0.9
2,975,901	-		Xcc-8004.3044.1	0.67	-0.7
2,975,901	-		Xcc-8004.3044.1	0.67	-0.3
2,975,901	-		Xcc-8004.3044.1	0.67	-1.5
2,976,014	+		Xcc-8004.3044.1	0.75	+1.1
2,976,015	-		Xcc-8004.3044.1	0.75	+0.0
2,976,015	-		Xcc-8004.3044.1	0.75	-0.2
2,976,015	-		Xcc-8004.3044.1	0.75	-0.0
2,976,015	-		Xcc-8004.3044.1	0.75	+2.9
2,976,092	+		Xcc-8004.3044.1	0.80	-1.8
2,976,092	+		Xcc-8004.3044.1	0.80	-0.3
2,976,092	+		Xcc-8004.3044.1	0.80	-0.4
2,976,092	+		Xcc-8004.3044.1	0.80	-1.1
2,976,092	+		Xcc-8004.3044.1	0.80	-1.0
2,976,092	+		Xcc-8004.3044.1	0.80	-0.1
2,976,092	+		Xcc-8004.3044.1	0.80	-0.5
2,976,092	+		Xcc-8004.3044.1	0.80	+0.2
2,976,092	+		Xcc-8004.3044.1	0.80	-1.0
2,976,092	+		Xcc-8004.3044.1	0.80	+0.8
2,976,093	-		Xcc-8004.3044.1	0.80	-0.3
2,976,093	-		Xcc-8004.3044.1	0.80	+0.7
2,976,093	-		Xcc-8004.3044.1	0.80	-0.6
2,976,093	-		Xcc-8004.3044.1	0.80	-0.1
2,976,093	-		Xcc-8004.3044.1	0.80	-0.9
2,976,093	-		Xcc-8004.3044.1	0.80	+0.7
2,976,093	-		Xcc-8004.3044.1	0.80	+0.6
2,976,093	-		Xcc-8004.3044.1	0.80	+0.0
2,976,167	+		Xcc-8004.3044.1	0.84	-0.5
2,976,167	+		Xcc-8004.3044.1	0.84	-1.8
2,976,167	+		Xcc-8004.3044.1	0.84	-0.2
2,976,167	+		Xcc-8004.3044.1	0.84	+1.8
2,976,168	-		Xcc-8004.3044.1	0.84	-0.9
2,976,168	-		Xcc-8004.3044.1	0.84	+0.9
2,976,168	-		Xcc-8004.3044.1	0.84	-1.6
2,976,168	-		Xcc-8004.3044.1	0.84	-0.5
2,976,234	+		Xcc-8004.3044.1	0.89	-0.6
2,976,234	+		Xcc-8004.3044.1	0.89	-0.3
2,976,234	+		Xcc-8004.3044.1	0.89	+0.3
2,976,235	-		Xcc-8004.3044.1	0.89	+1.1
2,976,296	+				-2.1
2,976,297	-				+0.0
2,976,297	-				-0.8
2,976,297	-				-0.3
2,976,297	-				-2.5
2,976,297	-				+0.2
2,976,371	+				-0.2
2,976,371	+				-2.5
2,976,371	+				+0.9
2,976,371	+				+1.2
2,976,371	+				-0.3
2,976,372	-				+0.1
2,976,372	-				+0.0
2,976,372	-				+1.3
2,976,372	-				-0.2
2,976,372	-				+2.2
2,976,372	-				-0.4
2,976,483	+				+0.8
2,976,483	+				+1.4
2,976,483	+				-1.0
2,976,483	+				+0.8
2,976,483	+				+0.1
2,976,483	+				-2.4
2,976,483	+				+1.4
2,976,484	-				-2.0
2,976,484	-				+0.3
2,976,484	-				-1.4
2,976,484	-				+1.3
2,976,484	-				-1.1
2,976,484	-				-1.1
2,976,484	-				+1.0
2,976,484	-				-1.2
2,976,484	-				+0.6
2,976,484	-				+1.0
2,976,484	-				-0.3
2,976,487	+				-1.3
2,976,487	+				-1.0
2,976,487	+				-0.6
2,976,487	+				-0.8
2,976,487	+				-0.9
2,976,488	-				-0.5
2,976,488	-				+0.2
2,976,488	-				+1.4
2,976,488	-				-0.0
2,976,488	-				-0.2
2,976,488	-				+1.3
2,976,488	-				+2.3
2,976,491	+				+0.6
2,976,492	-				+0.7
2,976,492	-				+1.0
2,976,492	-				+1.0
2,976,492	-				-0.7
2,976,492	-				+0.3
2,976,673	+				+0.5
2,976,673	+				-0.3
2,976,673	+				-0.1
2,976,673	+				-0.1
2,976,673	+				+2.5
2,976,673	+				-0.2
2,976,673	+				+0.5
2,976,673	+				-1.0
2,976,674	-				-3.1
2,976,674	-				-0.7
2,976,674	-				+0.6
2,976,674	-				+1.8
2,976,674	-				-0.9
2,976,674	-				-0.5
2,976,674	-				-1.1
2,976,674	-				-1.2
2,976,674	-				+1.0
2,977,216	+		Xcc-8004.3045.1	0.21	+0.7
2,977,216	+		Xcc-8004.3045.1	0.21	+0.0
2,977,216	+		Xcc-8004.3045.1	0.21	+1.3
2,977,216	+		Xcc-8004.3045.1	0.21	+0.9
2,977,217	-		Xcc-8004.3045.1	0.21	+0.7
2,977,217	-		Xcc-8004.3045.1	0.21	+0.4
2,977,217	-		Xcc-8004.3045.1	0.21	-0.1
2,977,217	-		Xcc-8004.3045.1	0.21	-0.7
2,977,217	-		Xcc-8004.3045.1	0.21	-2.4
2,977,217	-		Xcc-8004.3045.1	0.21	+1.3
2,977,327	+		Xcc-8004.3045.1	0.25	+0.7
2,977,327	+		Xcc-8004.3045.1	0.25	-1.2
2,977,327	+		Xcc-8004.3045.1	0.25	+1.2
2,977,327	+		Xcc-8004.3045.1	0.25	+0.3
2,977,328	-		Xcc-8004.3045.1	0.25	+2.1
2,977,328	-		Xcc-8004.3045.1	0.25	-0.3
2,977,328	-		Xcc-8004.3045.1	0.25	-0.4
2,977,328	-		Xcc-8004.3045.1	0.25	-0.0
2,977,328	-		Xcc-8004.3045.1	0.25	+0.3