Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1485.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1483.1 and Xcc-8004.1484.1 are separated by 262 nucleotidesXcc-8004.1484.1 and Xcc-8004.1485.1 are separated by 60 nucleotidesXcc-8004.1485.1 and Xcc-8004.1486.1 overlap by 4 nucleotidesXcc-8004.1486.1 and Xcc-8004.1487.1 overlap by 4 nucleotides Xcc-8004.1483.1: Xcc-8004.1483.1 - PhoP/Q-regulated protein PqaA, at 1,412,687 to 1,414,174 Xcc-8004.1483.1 Xcc-8004.1484.1: Xcc-8004.1484.1 - FIG01210307: hypothetical protein, at 1,414,437 to 1,414,949 Xcc-8004.1484.1 Xcc-8004.1485.1: Xcc-8004.1485.1 - Coenzyme PQQ synthesis protein E, at 1,415,010 to 1,416,140 Xcc-8004.1485.1 Xcc-8004.1486.1: Xcc-8004.1486.1 - Coenzyme PQQ synthesis protein D, at 1,416,137 to 1,416,415 Xcc-8004.1486.1 Xcc-8004.1487.1: Xcc-8004.1487.1 - hypothetical protein, at 1,416,412 to 1,417,164 Xcc-8004.1487.1 Position (kb) 1415 1416 1417Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.471 kb on + strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.900 kb on - strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1415.303 kb on + strand, within Xcc-8004.1485.1at 1415.396 kb on + strand, within Xcc-8004.1485.1at 1415.396 kb on + strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.397 kb on - strand, within Xcc-8004.1485.1at 1415.450 kb on - strand, within Xcc-8004.1485.1at 1415.453 kb on - strand, within Xcc-8004.1485.1at 1415.584 kb on + strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.585 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.588 kb on - strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.594 kb on + strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.595 kb on - strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.890 kb on + strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1415.891 kb on - strand, within Xcc-8004.1485.1at 1416.070 kb on + strandat 1416.070 kb on + strandat 1416.071 kb on - strandat 1416.111 kb on + strandat 1416.112 kb on - strandat 1416.332 kb on + strand, within Xcc-8004.1486.1at 1416.332 kb on + strand, within Xcc-8004.1486.1at 1416.368 kb on + strand, within Xcc-8004.1486.1at 1416.483 kb on - strandat 1416.517 kb on + strand, within Xcc-8004.1487.1at 1416.517 kb on + strand, within Xcc-8004.1487.1at 1416.518 kb on - strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.590 kb on + strand, within Xcc-8004.1487.1at 1416.644 kb on + strand, within Xcc-8004.1487.1at 1416.675 kb on - strand, within Xcc-8004.1487.1at 1416.785 kb on + strand, within Xcc-8004.1487.1at 1416.786 kb on - strand, within Xcc-8004.1487.1at 1416.868 kb on + strand, within Xcc-8004.1487.1at 1417.011 kb on - strand, within Xcc-8004.1487.1at 1417.011 kb on - strand, within Xcc-8004.1487.1at 1417.101 kb on - strandat 1417.101 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,414,439 - -0.3
1,414,439 - +0.1
1,414,439 - -1.8
1,414,439 - +0.4
1,414,471 + -1.9
1,414,472 - +0.2
1,414,472 - +0.7
1,414,472 - +0.6
1,414,489 + Xcc-8004.1484.1 0.10 +1.3
1,414,489 + Xcc-8004.1484.1 0.10 +0.9
1,414,489 + Xcc-8004.1484.1 0.10 -1.9
1,414,489 + Xcc-8004.1484.1 0.10 +0.0
1,414,489 + Xcc-8004.1484.1 0.10 +0.6
1,414,490 - Xcc-8004.1484.1 0.10 -1.6
1,414,490 - Xcc-8004.1484.1 0.10 -0.3
1,414,490 - Xcc-8004.1484.1 0.10 -0.4
1,414,490 - Xcc-8004.1484.1 0.10 -0.4
1,414,490 - Xcc-8004.1484.1 0.10 +0.6
1,414,490 - Xcc-8004.1484.1 0.10 -0.2
1,414,600 + Xcc-8004.1484.1 0.32 +1.0
1,414,600 + Xcc-8004.1484.1 0.32 -1.8
1,414,600 + Xcc-8004.1484.1 0.32 +0.1
1,414,601 - Xcc-8004.1484.1 0.32 -0.9
1,414,601 - Xcc-8004.1484.1 0.32 +0.4
1,414,601 - Xcc-8004.1484.1 0.32 -2.7
1,414,601 - Xcc-8004.1484.1 0.32 +1.5
1,414,900 - -0.1
1,414,981 + -0.3
1,414,981 + -0.2
1,414,981 + +0.5
1,414,981 + -0.5
1,414,981 + +0.4
1,414,982 - -1.9
1,414,982 - -0.4
1,414,982 - -0.6
1,414,982 - +0.5
1,414,982 - -0.5
1,415,303 + Xcc-8004.1485.1 0.26 -0.2
1,415,396 + Xcc-8004.1485.1 0.34 -1.0
1,415,396 + Xcc-8004.1485.1 0.34 +0.7
1,415,397 - Xcc-8004.1485.1 0.34 +1.3
1,415,397 - Xcc-8004.1485.1 0.34 +0.6
1,415,397 - Xcc-8004.1485.1 0.34 +0.1
1,415,450 - Xcc-8004.1485.1 0.39 +1.3
1,415,453 - Xcc-8004.1485.1 0.39 +0.4
1,415,584 + Xcc-8004.1485.1 0.51 +2.3
1,415,585 - Xcc-8004.1485.1 0.51 -1.1
1,415,585 - Xcc-8004.1485.1 0.51 +0.7
1,415,585 - Xcc-8004.1485.1 0.51 -1.2
1,415,588 - Xcc-8004.1485.1 0.51 -2.1
1,415,588 - Xcc-8004.1485.1 0.51 -0.5
1,415,588 - Xcc-8004.1485.1 0.51 -0.7
1,415,594 + Xcc-8004.1485.1 0.52 -3.1
1,415,594 + Xcc-8004.1485.1 0.52 -1.2
1,415,594 + Xcc-8004.1485.1 0.52 +1.1
1,415,594 + Xcc-8004.1485.1 0.52 +0.5
1,415,595 - Xcc-8004.1485.1 0.52 +0.1
1,415,595 - Xcc-8004.1485.1 0.52 +0.8
1,415,890 + Xcc-8004.1485.1 0.78 +0.5
1,415,890 + Xcc-8004.1485.1 0.78 -1.2
1,415,890 + Xcc-8004.1485.1 0.78 -0.7
1,415,891 - Xcc-8004.1485.1 0.78 +1.2
1,415,891 - Xcc-8004.1485.1 0.78 -0.6
1,415,891 - Xcc-8004.1485.1 0.78 +0.4
1,415,891 - Xcc-8004.1485.1 0.78 -0.5
1,416,070 + -1.6
1,416,070 + +0.1
1,416,071 - -1.3
1,416,111 + -3.3
1,416,112 - +0.4
1,416,332 + Xcc-8004.1486.1 0.70 -0.5
1,416,332 + Xcc-8004.1486.1 0.70 +0.9
1,416,368 + Xcc-8004.1486.1 0.83 +1.2
1,416,483 - +0.9
1,416,517 + Xcc-8004.1487.1 0.14 +1.3
1,416,517 + Xcc-8004.1487.1 0.14 +0.6
1,416,518 - Xcc-8004.1487.1 0.14 -0.5
1,416,590 + Xcc-8004.1487.1 0.24 -1.1
1,416,590 + Xcc-8004.1487.1 0.24 +1.1
1,416,590 + Xcc-8004.1487.1 0.24 +0.6
1,416,590 + Xcc-8004.1487.1 0.24 +0.3
1,416,644 + Xcc-8004.1487.1 0.31 +1.3
1,416,675 - Xcc-8004.1487.1 0.35 -1.3
1,416,785 + Xcc-8004.1487.1 0.50 +2.3
1,416,786 - Xcc-8004.1487.1 0.50 -0.3
1,416,868 + Xcc-8004.1487.1 0.61 -0.9
1,417,011 - Xcc-8004.1487.1 0.80 -0.1
1,417,011 - Xcc-8004.1487.1 0.80 -0.5
1,417,101 - -1.5
1,417,101 - +0.9

Or see this region's nucleotide sequence