Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1421.1

Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1420.1 and Xcc-8004.1421.1 are separated by 215 nucleotidesXcc-8004.1421.1 and Xcc-8004.1422.1 are separated by 100 nucleotides Xcc-8004.1420.1: Xcc-8004.1420.1 - Beta-lactamase (EC 3.5.2.6), at 1,356,242 to 1,357,132 Xcc-8004.1420.1 Xcc-8004.1421.1: Xcc-8004.1421.1 - Xylanase, at 1,357,348 to 1,358,367 Xcc-8004.1421.1 Xcc-8004.1422.1: Xcc-8004.1422.1 - Phospholipase C, at 1,358,468 to 1,360,615 Xcc-8004.1422.1 Position (kb) 1357 1358 1359Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1356.484 kb on - strand, within Xcc-8004.1420.1at 1356.731 kb on - strand, within Xcc-8004.1420.1at 1356.731 kb on - strand, within Xcc-8004.1420.1at 1356.731 kb on - strand, within Xcc-8004.1420.1at 1357.046 kb on + strandat 1357.114 kb on - strandat 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.621 kb on + strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.622 kb on - strand, within Xcc-8004.1421.1at 1357.715 kb on + strand, within Xcc-8004.1421.1at 1357.715 kb on + strand, within Xcc-8004.1421.1at 1357.716 kb on - strand, within Xcc-8004.1421.1at 1357.808 kb on - strand, within Xcc-8004.1421.1at 1357.810 kb on + strand, within Xcc-8004.1421.1at 1357.954 kb on - strand, within Xcc-8004.1421.1at 1357.975 kb on + strand, within Xcc-8004.1421.1at 1357.975 kb on + strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1357.976 kb on - strand, within Xcc-8004.1421.1at 1358.035 kb on + strand, within Xcc-8004.1421.1at 1358.036 kb on - strand, within Xcc-8004.1421.1at 1358.197 kb on + strand, within Xcc-8004.1421.1at 1358.197 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.200 kb on + strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.201 kb on - strand, within Xcc-8004.1421.1at 1358.245 kb on + strand, within Xcc-8004.1421.1at 1358.246 kb on - strand, within Xcc-8004.1421.1at 1358.246 kb on - strand, within Xcc-8004.1421.1at 1358.505 kb on + strandat 1358.506 kb on - strandat 1358.506 kb on - strandat 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.751 kb on + strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.752 kb on - strand, within Xcc-8004.1422.1at 1358.753 kb on + strand, within Xcc-8004.1422.1at 1358.890 kb on - strand, within Xcc-8004.1422.1at 1358.934 kb on + strand, within Xcc-8004.1422.1at 1358.934 kb on + strand, within Xcc-8004.1422.1at 1358.970 kb on + strand, within Xcc-8004.1422.1at 1358.970 kb on + strand, within Xcc-8004.1422.1at 1359.178 kb on + strand, within Xcc-8004.1422.1at 1359.179 kb on - strand, within Xcc-8004.1422.1at 1359.274 kb on + strand, within Xcc-8004.1422.1at 1359.275 kb on - strand, within Xcc-8004.1422.1at 1359.337 kb on - strand, within Xcc-8004.1422.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes)
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1,356,484 - Xcc-8004.1420.1 0.27 -0.6
1,356,731 - Xcc-8004.1420.1 0.55 -0.2
1,356,731 - Xcc-8004.1420.1 0.55 +4.1
1,356,731 - Xcc-8004.1420.1 0.55 +0.8
1,357,046 + -0.3
1,357,114 - -2.0
1,357,621 + Xcc-8004.1421.1 0.27 -2.7
1,357,621 + Xcc-8004.1421.1 0.27 +3.3
1,357,621 + Xcc-8004.1421.1 0.27 -0.4
1,357,621 + Xcc-8004.1421.1 0.27 -2.0
1,357,621 + Xcc-8004.1421.1 0.27 -0.5
1,357,622 - Xcc-8004.1421.1 0.27 +0.9
1,357,622 - Xcc-8004.1421.1 0.27 +0.2
1,357,622 - Xcc-8004.1421.1 0.27 +0.3
1,357,715 + Xcc-8004.1421.1 0.36 -0.8
1,357,715 + Xcc-8004.1421.1 0.36 -0.5
1,357,716 - Xcc-8004.1421.1 0.36 +1.0
1,357,808 - Xcc-8004.1421.1 0.45 -1.8
1,357,810 + Xcc-8004.1421.1 0.45 -1.0
1,357,954 - Xcc-8004.1421.1 0.59 +1.0
1,357,975 + Xcc-8004.1421.1 0.61 -0.3
1,357,975 + Xcc-8004.1421.1 0.61 -0.0
1,357,976 - Xcc-8004.1421.1 0.62 +0.4
1,357,976 - Xcc-8004.1421.1 0.62 +1.2
1,357,976 - Xcc-8004.1421.1 0.62 -2.5
1,358,035 + Xcc-8004.1421.1 0.67 +1.1
1,358,036 - Xcc-8004.1421.1 0.67 +1.3
1,358,197 + Xcc-8004.1421.1 0.83 +2.5
1,358,197 + Xcc-8004.1421.1 0.83 -0.0
1,358,200 + Xcc-8004.1421.1 0.84 +0.4
1,358,200 + Xcc-8004.1421.1 0.84 -0.3
1,358,200 + Xcc-8004.1421.1 0.84 -0.2
1,358,200 + Xcc-8004.1421.1 0.84 +0.3
1,358,200 + Xcc-8004.1421.1 0.84 -0.1
1,358,200 + Xcc-8004.1421.1 0.84 -0.9
1,358,200 + Xcc-8004.1421.1 0.84 +0.6
1,358,201 - Xcc-8004.1421.1 0.84 +0.1
1,358,201 - Xcc-8004.1421.1 0.84 +0.9
1,358,201 - Xcc-8004.1421.1 0.84 -0.3
1,358,201 - Xcc-8004.1421.1 0.84 -1.0
1,358,201 - Xcc-8004.1421.1 0.84 -3.1
1,358,201 - Xcc-8004.1421.1 0.84 +0.4
1,358,201 - Xcc-8004.1421.1 0.84 +0.3
1,358,201 - Xcc-8004.1421.1 0.84 -0.9
1,358,245 + Xcc-8004.1421.1 0.88 +0.5
1,358,246 - Xcc-8004.1421.1 0.88 +0.4
1,358,246 - Xcc-8004.1421.1 0.88 -0.7
1,358,505 + -2.4
1,358,506 - +1.3
1,358,506 - -2.6
1,358,751 + Xcc-8004.1422.1 0.13 +1.1
1,358,751 + Xcc-8004.1422.1 0.13 +0.2
1,358,751 + Xcc-8004.1422.1 0.13 +0.2
1,358,751 + Xcc-8004.1422.1 0.13 +1.5
1,358,751 + Xcc-8004.1422.1 0.13 -1.1
1,358,751 + Xcc-8004.1422.1 0.13 -0.4
1,358,751 + Xcc-8004.1422.1 0.13 -0.7
1,358,751 + Xcc-8004.1422.1 0.13 -1.8
1,358,752 - Xcc-8004.1422.1 0.13 -1.3
1,358,752 - Xcc-8004.1422.1 0.13 -1.5
1,358,752 - Xcc-8004.1422.1 0.13 +0.5
1,358,752 - Xcc-8004.1422.1 0.13 -0.4
1,358,752 - Xcc-8004.1422.1 0.13 +1.7
1,358,752 - Xcc-8004.1422.1 0.13 -0.8
1,358,752 - Xcc-8004.1422.1 0.13 +1.0
1,358,752 - Xcc-8004.1422.1 0.13 -0.2
1,358,752 - Xcc-8004.1422.1 0.13 +1.1
1,358,752 - Xcc-8004.1422.1 0.13 +0.7
1,358,752 - Xcc-8004.1422.1 0.13 +1.5
1,358,752 - Xcc-8004.1422.1 0.13 +0.6
1,358,752 - Xcc-8004.1422.1 0.13 -1.0
1,358,753 + Xcc-8004.1422.1 0.13 +2.5
1,358,890 - Xcc-8004.1422.1 0.20 -0.8
1,358,934 + Xcc-8004.1422.1 0.22 +1.6
1,358,934 + Xcc-8004.1422.1 0.22 +0.0
1,358,970 + Xcc-8004.1422.1 0.23 -1.3
1,358,970 + Xcc-8004.1422.1 0.23 +0.4
1,359,178 + Xcc-8004.1422.1 0.33 +1.3
1,359,179 - Xcc-8004.1422.1 0.33 -0.7
1,359,274 + Xcc-8004.1422.1 0.38 -0.4
1,359,275 - Xcc-8004.1422.1 0.38 +0.2
1,359,337 - Xcc-8004.1422.1 0.40 -0.6

Or see this region's nucleotide sequence