Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.122.1 and Xcc-8004.124.1 are separated by 513 nucleotides Xcc-8004.124.1 and Xcc-8004.123.1 overlap by 139 nucleotides
Xcc-8004.122.1: Xcc-8004.122.1 - TldD family protein, Actinobacterial subgroup, at 111,541 to 113,217
Xcc-8004.122.1
Xcc-8004.124.1: Xcc-8004.124.1 - hypothetical protein, at 113,731 to 114,162
Xcc-8004.124.1
Xcc-8004.123.1: Xcc-8004.123.1 - TldD family protein, Actinobacterial subgroup, at 114,024 to 115,685
Xcc-8004.123.1
Position (kb) 113
114
115 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 112.977 kb on - strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.000 kb on + strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.001 kb on - strand, within Xcc-8004.122.1 at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.112 kb on - strand at 113.190 kb on + strand at 113.191 kb on - strand at 113.444 kb on - strand at 113.444 kb on - strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.499 kb on + strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.502 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.516 kb on - strand at 113.588 kb on + strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.589 kb on - strand at 113.599 kb on - strand at 113.606 kb on + strand at 113.606 kb on + strand at 113.607 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.627 kb on - strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.751 kb on + strand at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.850 kb on + strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.851 kb on - strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.860 kb on + strand, within Xcc-8004.124.1 at 113.861 kb on - strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.966 kb on + strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.967 kb on - strand, within Xcc-8004.124.1 at 113.988 kb on - strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.000 kb on + strand, within Xcc-8004.124.1 at 114.001 kb on - strand, within Xcc-8004.124.1 at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.051 kb on + strand at 114.052 kb on - strand at 114.260 kb on - strand, within Xcc-8004.123.1 at 114.260 kb on - strand, within Xcc-8004.123.1 at 114.289 kb on + strand, within Xcc-8004.123.1 at 114.289 kb on + strand, within Xcc-8004.123.1 at 114.289 kb on + strand, within Xcc-8004.123.1 at 114.289 kb on + strand, within Xcc-8004.123.1 at 114.289 kb on + strand, within Xcc-8004.123.1 at 114.290 kb on - strand, within Xcc-8004.123.1 at 114.290 kb on - strand, within Xcc-8004.123.1 at 114.310 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.327 kb on + strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.328 kb on - strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.331 kb on + strand, within Xcc-8004.123.1 at 114.332 kb on - strand, within Xcc-8004.123.1 at 114.332 kb on - strand, within Xcc-8004.123.1 at 114.332 kb on - strand, within Xcc-8004.123.1 at 114.446 kb on - strand, within Xcc-8004.123.1 at 114.446 kb on - strand, within Xcc-8004.123.1 at 114.568 kb on + strand, within Xcc-8004.123.1 at 114.569 kb on - strand, within Xcc-8004.123.1 at 114.685 kb on + strand, within Xcc-8004.123.1 at 114.685 kb on + strand, within Xcc-8004.123.1 at 114.685 kb on + strand, within Xcc-8004.123.1 at 114.686 kb on - strand, within Xcc-8004.123.1 at 114.697 kb on + strand, within Xcc-8004.123.1 at 114.697 kb on + strand, within Xcc-8004.123.1 at 114.697 kb on + strand, within Xcc-8004.123.1 at 114.698 kb on - strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.784 kb on + strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.785 kb on - strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.865 kb on + strand, within Xcc-8004.123.1 at 114.866 kb on - strand, within Xcc-8004.123.1 at 114.866 kb on - strand, within Xcc-8004.123.1 at 114.866 kb on - strand, within Xcc-8004.123.1 at 114.866 kb on - strand, within Xcc-8004.123.1 at 114.931 kb on + strand, within Xcc-8004.123.1 at 114.931 kb on + strand, within Xcc-8004.123.1 at 114.932 kb on - strand, within Xcc-8004.123.1 at 114.938 kb on - strand, within Xcc-8004.123.1 at 114.938 kb on - strand, within Xcc-8004.123.1 at 114.938 kb on - strand, within Xcc-8004.123.1 at 114.938 kb on - strand, within Xcc-8004.123.1 at 115.051 kb on + strand, within Xcc-8004.123.1 at 115.051 kb on + strand, within Xcc-8004.123.1 at 115.051 kb on + strand, within Xcc-8004.123.1 at 115.051 kb on + strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.052 kb on - strand, within Xcc-8004.123.1 at 115.075 kb on + strand, within Xcc-8004.123.1 at 115.075 kb on + strand, within Xcc-8004.123.1 at 115.076 kb on - strand, within Xcc-8004.123.1 at 115.076 kb on - strand, within Xcc-8004.123.1 at 115.076 kb on - strand, within Xcc-8004.123.1 at 115.076 kb on - strand, within Xcc-8004.123.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 112,977 - Xcc-8004.122.1 0.86 -0.2 113,000 + Xcc-8004.122.1 0.87 -0.6 113,000 + Xcc-8004.122.1 0.87 +0.3 113,001 - Xcc-8004.122.1 0.87 -1.2 113,001 - Xcc-8004.122.1 0.87 -1.0 113,001 - Xcc-8004.122.1 0.87 +1.5 113,112 - +0.9 113,112 - -0.4 113,112 - -1.2 113,112 - -0.3 113,112 - -0.7 113,112 - +1.3 113,190 + +1.2 113,191 - -0.0 113,444 - +1.2 113,444 - -0.4 113,499 + +0.7 113,499 + +0.5 113,499 + +1.4 113,502 - +0.2 113,502 - -0.9 113,502 - +1.3 113,516 - +0.8 113,516 - +0.7 113,516 - +2.3 113,588 + +0.8 113,589 - +0.2 113,589 - -1.6 113,589 - +0.3 113,589 - +1.3 113,599 - +1.0 113,606 + +0.5 113,606 + +0.3 113,607 - +1.7 113,627 - -1.0 113,627 - -0.2 113,627 - -1.0 113,627 - +0.3 113,751 + -0.7 113,751 + -1.5 113,751 + -2.1 113,850 + Xcc-8004.124.1 0.28 +0.9 113,850 + Xcc-8004.124.1 0.28 +1.4 113,850 + Xcc-8004.124.1 0.28 -0.7 113,850 + Xcc-8004.124.1 0.28 +0.0 113,851 - Xcc-8004.124.1 0.28 -1.9 113,851 - Xcc-8004.124.1 0.28 +0.1 113,860 + Xcc-8004.124.1 0.30 +0.1 113,860 + Xcc-8004.124.1 0.30 -1.3 113,860 + Xcc-8004.124.1 0.30 +1.2 113,860 + Xcc-8004.124.1 0.30 +1.0 113,861 - Xcc-8004.124.1 0.30 -1.1 113,966 + Xcc-8004.124.1 0.54 -1.4 113,966 + Xcc-8004.124.1 0.54 -0.8 113,967 - Xcc-8004.124.1 0.55 +0.4 113,967 - Xcc-8004.124.1 0.55 -1.7 113,967 - Xcc-8004.124.1 0.55 -1.0 113,988 - Xcc-8004.124.1 0.59 +1.2 114,000 + Xcc-8004.124.1 0.62 -0.2 114,000 + Xcc-8004.124.1 0.62 -0.7 114,000 + Xcc-8004.124.1 0.62 +0.3 114,000 + Xcc-8004.124.1 0.62 -1.8 114,001 - Xcc-8004.124.1 0.62 -0.1 114,051 + -0.2 114,051 + +0.7 114,051 + -0.2 114,051 + +0.7 114,052 - -0.5 114,260 - Xcc-8004.123.1 0.14 +0.3 114,260 - Xcc-8004.123.1 0.14 +0.5 114,289 + Xcc-8004.123.1 0.16 +0.8 114,289 + Xcc-8004.123.1 0.16 +0.4 114,289 + Xcc-8004.123.1 0.16 -0.9 114,289 + Xcc-8004.123.1 0.16 -2.9 114,289 + Xcc-8004.123.1 0.16 +0.1 114,290 - Xcc-8004.123.1 0.16 -0.5 114,290 - Xcc-8004.123.1 0.16 +0.1 114,310 + Xcc-8004.123.1 0.17 +0.5 114,327 + Xcc-8004.123.1 0.18 -0.0 114,327 + Xcc-8004.123.1 0.18 +1.0 114,327 + Xcc-8004.123.1 0.18 +0.3 114,327 + Xcc-8004.123.1 0.18 +0.7 114,327 + Xcc-8004.123.1 0.18 +0.4 114,327 + Xcc-8004.123.1 0.18 +1.3 114,327 + Xcc-8004.123.1 0.18 +0.4 114,327 + Xcc-8004.123.1 0.18 -0.5 114,327 + Xcc-8004.123.1 0.18 -0.6 114,327 + Xcc-8004.123.1 0.18 +2.8 114,328 - Xcc-8004.123.1 0.18 +0.7 114,328 - Xcc-8004.123.1 0.18 +0.2 114,328 - Xcc-8004.123.1 0.18 -1.5 114,328 - Xcc-8004.123.1 0.18 +0.8 114,328 - Xcc-8004.123.1 0.18 -0.0 114,328 - Xcc-8004.123.1 0.18 +0.7 114,328 - Xcc-8004.123.1 0.18 +0.0 114,328 - Xcc-8004.123.1 0.18 +1.7 114,328 - Xcc-8004.123.1 0.18 -0.2 114,328 - Xcc-8004.123.1 0.18 +1.1 114,328 - Xcc-8004.123.1 0.18 +0.3 114,331 + Xcc-8004.123.1 0.18 -1.3 114,331 + Xcc-8004.123.1 0.18 +0.4 114,331 + Xcc-8004.123.1 0.18 -0.4 114,331 + Xcc-8004.123.1 0.18 +0.9 114,331 + Xcc-8004.123.1 0.18 -0.0 114,331 + Xcc-8004.123.1 0.18 -0.1 114,331 + Xcc-8004.123.1 0.18 -0.4 114,332 - Xcc-8004.123.1 0.19 +1.3 114,332 - Xcc-8004.123.1 0.19 +0.7 114,332 - Xcc-8004.123.1 0.19 -0.2 114,446 - Xcc-8004.123.1 0.25 -0.1 114,446 - Xcc-8004.123.1 0.25 +1.6 114,568 + Xcc-8004.123.1 0.33 -0.5 114,569 - Xcc-8004.123.1 0.33 +0.1 114,685 + Xcc-8004.123.1 0.40 -0.7 114,685 + Xcc-8004.123.1 0.40 -2.7 114,685 + Xcc-8004.123.1 0.40 +0.4 114,686 - Xcc-8004.123.1 0.40 -0.3 114,697 + Xcc-8004.123.1 0.40 +0.1 114,697 + Xcc-8004.123.1 0.40 -0.3 114,697 + Xcc-8004.123.1 0.40 +2.3 114,698 - Xcc-8004.123.1 0.41 -0.2 114,784 + Xcc-8004.123.1 0.46 +1.5 114,784 + Xcc-8004.123.1 0.46 +0.4 114,784 + Xcc-8004.123.1 0.46 -0.0 114,784 + Xcc-8004.123.1 0.46 +1.3 114,784 + Xcc-8004.123.1 0.46 +3.5 114,784 + Xcc-8004.123.1 0.46 +1.6 114,785 - Xcc-8004.123.1 0.46 -0.0 114,785 - Xcc-8004.123.1 0.46 -0.5 114,785 - Xcc-8004.123.1 0.46 +0.2 114,785 - Xcc-8004.123.1 0.46 -0.7 114,785 - Xcc-8004.123.1 0.46 -1.1 114,785 - Xcc-8004.123.1 0.46 -0.0 114,785 - Xcc-8004.123.1 0.46 -0.6 114,865 + Xcc-8004.123.1 0.51 -0.1 114,865 + Xcc-8004.123.1 0.51 -0.5 114,865 + Xcc-8004.123.1 0.51 -1.5 114,865 + Xcc-8004.123.1 0.51 +0.3 114,865 + Xcc-8004.123.1 0.51 +1.0 114,865 + Xcc-8004.123.1 0.51 +0.2 114,865 + Xcc-8004.123.1 0.51 +0.4 114,865 + Xcc-8004.123.1 0.51 -0.0 114,866 - Xcc-8004.123.1 0.51 +0.5 114,866 - Xcc-8004.123.1 0.51 -0.5 114,866 - Xcc-8004.123.1 0.51 -0.3 114,866 - Xcc-8004.123.1 0.51 +0.4 114,931 + Xcc-8004.123.1 0.55 +0.4 114,931 + Xcc-8004.123.1 0.55 +0.0 114,932 - Xcc-8004.123.1 0.55 -0.7 114,938 - Xcc-8004.123.1 0.55 +4.5 114,938 - Xcc-8004.123.1 0.55 -2.6 114,938 - Xcc-8004.123.1 0.55 +1.4 114,938 - Xcc-8004.123.1 0.55 +1.8 115,051 + Xcc-8004.123.1 0.62 -0.1 115,051 + Xcc-8004.123.1 0.62 -1.0 115,051 + Xcc-8004.123.1 0.62 +0.3 115,051 + Xcc-8004.123.1 0.62 -0.1 115,052 - Xcc-8004.123.1 0.62 +2.0 115,052 - Xcc-8004.123.1 0.62 -0.5 115,052 - Xcc-8004.123.1 0.62 +0.4 115,052 - Xcc-8004.123.1 0.62 +0.3 115,052 - Xcc-8004.123.1 0.62 -1.8 115,052 - Xcc-8004.123.1 0.62 +1.2 115,052 - Xcc-8004.123.1 0.62 -0.3 115,075 + Xcc-8004.123.1 0.63 +1.7 115,075 + Xcc-8004.123.1 0.63 +0.4 115,076 - Xcc-8004.123.1 0.63 -1.0 115,076 - Xcc-8004.123.1 0.63 -0.5 115,076 - Xcc-8004.123.1 0.63 +0.6 115,076 - Xcc-8004.123.1 0.63 +1.0
Or see this region's nucleotide sequence