Experiment: Xylemvessel barcodes Location 2 4 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1010.1 and Xcc-8004.1012.1 are separated by 46 nucleotides Xcc-8004.1012.1 and Xcc-8004.1013.1 are separated by 211 nucleotides
Xcc-8004.1010.1: Xcc-8004.1010.1 - Aspartate aminotransferase (EC 2.6.1.1), at 954,779 to 956,050
Xcc-8004.1010.1
Xcc-8004.1012.1: Xcc-8004.1012.1 - hypothetical protein, at 956,097 to 956,879
Xcc-8004.1012.1
Xcc-8004.1013.1: Xcc-8004.1013.1 - Probable GTPase related to EngC, at 957,091 to 958,182
Xcc-8004.1013.1
Position (kb) 956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 955.392 kb on + strand, within Xcc-8004.1010.1 at 955.393 kb on - strand, within Xcc-8004.1010.1 at 955.407 kb on + strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.408 kb on - strand, within Xcc-8004.1010.1 at 955.483 kb on - strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.599 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.602 kb on + strand, within Xcc-8004.1010.1 at 955.782 kb on + strand, within Xcc-8004.1010.1 at 955.783 kb on - strand, within Xcc-8004.1010.1 at 955.831 kb on + strand, within Xcc-8004.1010.1 at 955.831 kb on + strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.832 kb on - strand, within Xcc-8004.1010.1 at 955.834 kb on - strand, within Xcc-8004.1010.1 at 956.050 kb on + strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.051 kb on - strand at 956.066 kb on + strand at 956.067 kb on - strand at 956.067 kb on - strand at 956.067 kb on - strand at 956.096 kb on + strand at 956.096 kb on + strand at 956.097 kb on - strand at 956.187 kb on - strand, within Xcc-8004.1012.1 at 956.289 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.452 kb on + strand, within Xcc-8004.1012.1 at 956.453 kb on - strand, within Xcc-8004.1012.1 at 956.472 kb on - strand, within Xcc-8004.1012.1 at 956.496 kb on + strand, within Xcc-8004.1012.1 at 956.497 kb on - strand, within Xcc-8004.1012.1 at 956.527 kb on - strand, within Xcc-8004.1012.1 at 956.567 kb on + strand, within Xcc-8004.1012.1 at 956.568 kb on - strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.570 kb on + strand, within Xcc-8004.1012.1 at 956.611 kb on - strand, within Xcc-8004.1012.1 at 956.681 kb on + strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.682 kb on - strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.683 kb on + strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.684 kb on - strand, within Xcc-8004.1012.1 at 956.891 kb on + strand at 956.891 kb on + strand at 956.892 kb on - strand at 956.895 kb on + strand at 956.895 kb on + strand at 956.896 kb on - strand at 956.896 kb on - strand at 956.988 kb on - strand at 957.079 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 4 dpi (25 plantes) remove 955,392 + Xcc-8004.1010.1 0.48 -1.0 955,393 - Xcc-8004.1010.1 0.48 -0.7 955,407 + Xcc-8004.1010.1 0.49 -2.8 955,408 - Xcc-8004.1010.1 0.49 +0.2 955,408 - Xcc-8004.1010.1 0.49 -0.3 955,483 - Xcc-8004.1010.1 0.55 -1.3 955,599 + Xcc-8004.1010.1 0.64 -3.3 955,599 + Xcc-8004.1010.1 0.64 -2.0 955,602 + Xcc-8004.1010.1 0.65 -2.9 955,602 + Xcc-8004.1010.1 0.65 -2.2 955,782 + Xcc-8004.1010.1 0.79 -2.2 955,783 - Xcc-8004.1010.1 0.79 -1.6 955,831 + Xcc-8004.1010.1 0.83 -1.9 955,831 + Xcc-8004.1010.1 0.83 +0.1 955,832 - Xcc-8004.1010.1 0.83 -3.2 955,832 - Xcc-8004.1010.1 0.83 -0.1 955,832 - Xcc-8004.1010.1 0.83 +0.7 955,834 - Xcc-8004.1010.1 0.83 -0.0 956,050 + -1.4 956,051 - -3.3 956,051 - -1.4 956,051 - -0.1 956,051 - -2.2 956,066 + -2.0 956,067 - +0.2 956,067 - +1.3 956,067 - -1.9 956,096 + +1.5 956,096 + -0.9 956,097 - +1.0 956,187 - Xcc-8004.1012.1 0.11 +1.4 956,289 + Xcc-8004.1012.1 0.25 -2.0 956,452 + Xcc-8004.1012.1 0.45 -0.0 956,452 + Xcc-8004.1012.1 0.45 -0.5 956,453 - Xcc-8004.1012.1 0.45 -0.5 956,472 - Xcc-8004.1012.1 0.48 +0.0 956,496 + Xcc-8004.1012.1 0.51 +2.3 956,497 - Xcc-8004.1012.1 0.51 -1.2 956,527 - Xcc-8004.1012.1 0.55 +0.5 956,567 + Xcc-8004.1012.1 0.60 -0.4 956,568 - Xcc-8004.1012.1 0.60 -0.3 956,570 + Xcc-8004.1012.1 0.60 -0.4 956,570 + Xcc-8004.1012.1 0.60 +0.2 956,570 + Xcc-8004.1012.1 0.60 +0.4 956,611 - Xcc-8004.1012.1 0.66 -0.0 956,681 + Xcc-8004.1012.1 0.75 -0.1 956,682 - Xcc-8004.1012.1 0.75 -0.6 956,682 - Xcc-8004.1012.1 0.75 +1.6 956,682 - Xcc-8004.1012.1 0.75 -0.8 956,683 + Xcc-8004.1012.1 0.75 -1.2 956,683 + Xcc-8004.1012.1 0.75 -0.1 956,684 - Xcc-8004.1012.1 0.75 -0.2 956,684 - Xcc-8004.1012.1 0.75 +0.5 956,684 - Xcc-8004.1012.1 0.75 -0.2 956,684 - Xcc-8004.1012.1 0.75 +1.3 956,684 - Xcc-8004.1012.1 0.75 -1.0 956,891 + -0.3 956,891 + -0.7 956,892 - +2.3 956,895 + -1.9 956,895 + -2.1 956,896 - -1.0 956,896 - +0.3 956,988 - -1.2 957,079 + -0.2
Or see this region's nucleotide sequence