Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.939.1 and Xcc-8004.940.1 are separated by 10 nucleotides Xcc-8004.940.1 and Xcc-8004.941.1 overlap by 38 nucleotides Xcc-8004.941.1 and Xcc-8004.942.1 overlap by 4 nucleotides Xcc-8004.942.1 and Xcc-8004.943.1 are separated by 4 nucleotides
Xcc-8004.939.1: Xcc-8004.939.1 - hypothetical protein, at 882,423 to 885,077
Xcc-8004.939.1
Xcc-8004.940.1: Xcc-8004.940.1 - hypothetical protein, at 885,088 to 885,273
Xcc-8004.940.1
Xcc-8004.941.1: Xcc-8004.941.1 - General secretion pathway protein C, at 885,236 to 886,048
Xcc-8004.941.1
Xcc-8004.942.1: Xcc-8004.942.1 - hypothetical protein, at 886,045 to 888,117
Xcc-8004.942.1
Xcc-8004.943.1: Xcc-8004.943.1 - General secretion pathway protein E, at 888,122 to 889,621
Xcc-8004.943.1
Position (kb) 886
887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 885.045 kb on - strand at 885.048 kb on + strand at 885.048 kb on + strand at 885.049 kb on - strand at 885.055 kb on + strand at 885.524 kb on + strand, within Xcc-8004.941.1 at 885.998 kb on + strand at 887.228 kb on - strand, within Xcc-8004.942.1 at 887.520 kb on + strand, within Xcc-8004.942.1 at 887.521 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.604 kb on - strand, within Xcc-8004.942.1 at 887.950 kb on + strand at 887.951 kb on - strand at 887.956 kb on + strand at 887.956 kb on + strand at 887.957 kb on - strand at 888.338 kb on + strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.339 kb on - strand, within Xcc-8004.943.1 at 888.533 kb on + strand, within Xcc-8004.943.1 at 888.917 kb on + strand, within Xcc-8004.943.1 at 888.983 kb on + strand, within Xcc-8004.943.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 885,045 - +0.6 885,048 + +1.6 885,048 + +2.7 885,049 - -0.4 885,055 + -1.0 885,524 + Xcc-8004.941.1 0.35 -1.6 885,998 + -2.9 887,228 - Xcc-8004.942.1 0.57 -2.4 887,520 + Xcc-8004.942.1 0.71 +0.0 887,521 - Xcc-8004.942.1 0.71 -1.9 887,604 - Xcc-8004.942.1 0.75 -1.3 887,604 - Xcc-8004.942.1 0.75 +0.2 887,604 - Xcc-8004.942.1 0.75 -0.2 887,950 + +0.6 887,951 - -2.7 887,956 + +0.4 887,956 + -2.5 887,957 - +0.2 888,338 + Xcc-8004.943.1 0.14 -0.1 888,339 - Xcc-8004.943.1 0.14 +0.3 888,339 - Xcc-8004.943.1 0.14 +0.5 888,339 - Xcc-8004.943.1 0.14 -0.2 888,533 + Xcc-8004.943.1 0.27 -0.4 888,917 + Xcc-8004.943.1 0.53 -1.0 888,983 + Xcc-8004.943.1 0.57 +0.3
Or see this region's nucleotide sequence