Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.809.1 and Xcc-8004.810.1 are separated by 10 nucleotides Xcc-8004.810.1 and Xcc-8004.811.1 are separated by 154 nucleotides Xcc-8004.811.1 and Xcc-8004.812.1 are separated by 632 nucleotides
Xcc-8004.809.1: Xcc-8004.809.1 - FIG003003: hypothetical protein, at 752,672 to 753,463
Xcc-8004.809.1
Xcc-8004.810.1: Xcc-8004.810.1 - Endonuclease, at 753,474 to 754,301
Xcc-8004.810.1
Xcc-8004.811.1: Xcc-8004.811.1 - FIG01211260: hypothetical protein, at 754,456 to 755,466
Xcc-8004.811.1
Xcc-8004.812.1: Xcc-8004.812.1 - histidine kinase-response regulator hybrid protein, at 756,099 to 757,046
Xcc-8004.812.1
Position (kb) 754
755
756 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 753.473 kb on + strand at 753.473 kb on + strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.474 kb on - strand at 753.540 kb on - strand at 753.834 kb on + strand, within Xcc-8004.810.1 at 753.835 kb on - strand, within Xcc-8004.810.1 at 753.879 kb on + strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 753.880 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.117 kb on - strand, within Xcc-8004.810.1 at 754.131 kb on + strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.132 kb on - strand, within Xcc-8004.810.1 at 754.425 kb on + strand at 754.425 kb on + strand at 754.426 kb on - strand at 754.426 kb on - strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.546 kb on + strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.547 kb on - strand at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.597 kb on + strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.598 kb on - strand, within Xcc-8004.811.1 at 754.795 kb on + strand, within Xcc-8004.811.1 at 754.796 kb on - strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.155 kb on + strand, within Xcc-8004.811.1 at 755.156 kb on - strand, within Xcc-8004.811.1 at 755.402 kb on - strand at 755.484 kb on + strand at 755.504 kb on - strand at 755.504 kb on - strand at 755.627 kb on - strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.644 kb on + strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.645 kb on - strand at 755.654 kb on - strand at 755.673 kb on + strand at 755.673 kb on + strand at 755.674 kb on - strand at 755.674 kb on - strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.751 kb on + strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.752 kb on - strand at 755.818 kb on + strand at 755.818 kb on + strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.819 kb on - strand at 755.839 kb on - strand at 756.012 kb on - strand at 756.046 kb on + strand at 756.047 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.081 kb on - strand at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.200 kb on - strand, within Xcc-8004.812.1 at 756.211 kb on - strand, within Xcc-8004.812.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 753,473 + +0.3 753,473 + +1.7 753,474 - +1.9 753,474 - +1.1 753,474 - +1.2 753,540 - -0.4 753,834 + Xcc-8004.810.1 0.43 -0.3 753,835 - Xcc-8004.810.1 0.44 +0.7 753,879 + Xcc-8004.810.1 0.49 +0.4 753,880 - Xcc-8004.810.1 0.49 -0.2 753,880 - Xcc-8004.810.1 0.49 +0.2 754,117 - Xcc-8004.810.1 0.78 -0.6 754,117 - Xcc-8004.810.1 0.78 -0.8 754,117 - Xcc-8004.810.1 0.78 -0.0 754,131 + Xcc-8004.810.1 0.79 -1.2 754,132 - Xcc-8004.810.1 0.79 +1.2 754,132 - Xcc-8004.810.1 0.79 -0.6 754,425 + +0.4 754,425 + -1.3 754,426 - +1.6 754,426 - +0.2 754,546 + +1.9 754,546 + -2.3 754,546 + -0.3 754,547 - -1.8 754,547 - -0.5 754,547 - +0.7 754,547 - -1.4 754,547 - +0.6 754,547 - -0.6 754,597 + Xcc-8004.811.1 0.14 +0.1 754,597 + Xcc-8004.811.1 0.14 +1.1 754,598 - Xcc-8004.811.1 0.14 +0.1 754,598 - Xcc-8004.811.1 0.14 +3.3 754,598 - Xcc-8004.811.1 0.14 +1.7 754,598 - Xcc-8004.811.1 0.14 +0.2 754,795 + Xcc-8004.811.1 0.34 +1.4 754,796 - Xcc-8004.811.1 0.34 +0.8 755,155 + Xcc-8004.811.1 0.69 -0.1 755,155 + Xcc-8004.811.1 0.69 +0.3 755,155 + Xcc-8004.811.1 0.69 +0.3 755,156 - Xcc-8004.811.1 0.69 +1.5 755,402 - -2.4 755,484 + -1.2 755,504 - +0.2 755,504 - +0.5 755,627 - +0.7 755,644 + +1.6 755,644 + +0.6 755,644 + +0.6 755,645 - -2.2 755,645 - -2.3 755,645 - -0.3 755,645 - +0.6 755,645 - -0.9 755,654 - -1.0 755,673 + +4.0 755,673 + +0.7 755,674 - +0.3 755,674 - +0.2 755,751 + -2.0 755,751 + +2.9 755,751 + -1.7 755,752 - +0.8 755,752 - -1.1 755,752 - +0.5 755,818 + +0.5 755,818 + -2.0 755,819 - -0.6 755,819 - -1.8 755,819 - -0.7 755,839 - +0.5 756,012 - -0.5 756,046 + +1.2 756,047 - -2.1 756,081 - +0.4 756,081 - -1.9 756,081 - -0.5 756,081 - +0.4 756,200 - Xcc-8004.812.1 0.11 -0.2 756,200 - Xcc-8004.812.1 0.11 +0.3 756,200 - Xcc-8004.812.1 0.11 +2.6 756,211 - Xcc-8004.812.1 0.12 -0.9
Or see this region's nucleotide sequence