Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4980.1 and Xcc-8004.4982.1 are separated by 153 nucleotides Xcc-8004.4982.1 and Xcc-8004.4983.1 are separated by 232 nucleotides Xcc-8004.4983.1 and Xcc-8004.4984.1 are separated by 76 nucleotides Xcc-8004.4984.1 and Xcc-8004.4985.1 are separated by 110 nucleotides
Xcc-8004.4980.1: Xcc-8004.4980.1 - Tryptophanyl-tRNA synthetase (EC 6.1.1.2), at 4,729,045 to 4,730,340
Xcc-8004.4980.1
Xcc-8004.4982.1: Xcc-8004.4982.1 - Protein yjbJ, at 4,730,494 to 4,730,703
Xcc-8004.4982.1
Xcc-8004.4983.1: Xcc-8004.4983.1 - hypothetical protein, at 4,730,936 to 4,731,070
Xcc-8004.4983.1
Xcc-8004.4984.1: Xcc-8004.4984.1 - hypothetical protein, at 4,731,147 to 4,731,299
Xcc-8004.4984.1
Xcc-8004.4985.1: Xcc-8004.4985.1 - Arginase (EC 3.5.3.1), at 4,731,410 to 4,732,333
Xcc-8004.4985.1
Position (kb) 4731
4732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4730.341 kb on - strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.415 kb on + strand at 4730.565 kb on - strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.591 kb on + strand, within Xcc-8004.4982.1 at 4730.592 kb on - strand, within Xcc-8004.4982.1 at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.857 kb on + strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4730.858 kb on - strand at 4731.070 kb on + strand at 4731.070 kb on + strand at 4731.087 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.149 kb on - strand at 4731.155 kb on + strand at 4731.156 kb on - strand at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.236 kb on + strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.237 kb on - strand, within Xcc-8004.4984.1 at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.491 kb on + strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.492 kb on - strand at 4731.576 kb on + strand, within Xcc-8004.4985.1 at 4731.577 kb on - strand, within Xcc-8004.4985.1 at 4731.605 kb on + strand, within Xcc-8004.4985.1 at 4731.605 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.726 kb on + strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.727 kb on - strand, within Xcc-8004.4985.1 at 4731.738 kb on + strand, within Xcc-8004.4985.1 at 4731.738 kb on + strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.739 kb on - strand, within Xcc-8004.4985.1 at 4731.920 kb on + strand, within Xcc-8004.4985.1 at 4731.920 kb on + strand, within Xcc-8004.4985.1 at 4731.921 kb on - strand, within Xcc-8004.4985.1 at 4731.931 kb on + strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.932 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4731.994 kb on - strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.080 kb on + strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1 at 4732.081 kb on - strand, within Xcc-8004.4985.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,730,341 - -0.3 4,730,415 + -0.1 4,730,415 + -0.6 4,730,415 + -1.5 4,730,415 + -1.5 4,730,565 - Xcc-8004.4982.1 0.34 -0.9 4,730,591 + Xcc-8004.4982.1 0.46 +1.3 4,730,591 + Xcc-8004.4982.1 0.46 +0.7 4,730,592 - Xcc-8004.4982.1 0.47 -2.8 4,730,857 + -0.3 4,730,857 + +0.1 4,730,857 + -0.4 4,730,857 + +0.1 4,730,857 + -2.7 4,730,858 - +3.3 4,730,858 - -2.5 4,730,858 - +0.9 4,731,070 + +0.5 4,731,070 + -2.7 4,731,087 - -0.4 4,731,149 - +2.4 4,731,149 - +1.2 4,731,149 - +0.5 4,731,155 + +0.7 4,731,156 - +0.9 4,731,236 + Xcc-8004.4984.1 0.58 -0.6 4,731,236 + Xcc-8004.4984.1 0.58 +0.9 4,731,236 + Xcc-8004.4984.1 0.58 -0.0 4,731,236 + Xcc-8004.4984.1 0.58 -0.9 4,731,237 - Xcc-8004.4984.1 0.59 +2.0 4,731,237 - Xcc-8004.4984.1 0.59 +3.0 4,731,237 - Xcc-8004.4984.1 0.59 +1.6 4,731,237 - Xcc-8004.4984.1 0.59 +2.7 4,731,237 - Xcc-8004.4984.1 0.59 +0.1 4,731,491 + +0.6 4,731,491 + +0.4 4,731,491 + -0.4 4,731,491 + -1.5 4,731,492 - +0.6 4,731,492 - -1.0 4,731,492 - +0.5 4,731,492 - -0.9 4,731,492 - -1.3 4,731,492 - +0.6 4,731,492 - -1.4 4,731,576 + Xcc-8004.4985.1 0.18 -1.6 4,731,577 - Xcc-8004.4985.1 0.18 -1.6 4,731,605 + Xcc-8004.4985.1 0.21 -0.2 4,731,605 + Xcc-8004.4985.1 0.21 -0.6 4,731,726 + Xcc-8004.4985.1 0.34 +1.3 4,731,726 + Xcc-8004.4985.1 0.34 -0.9 4,731,726 + Xcc-8004.4985.1 0.34 -0.7 4,731,727 - Xcc-8004.4985.1 0.34 -0.8 4,731,727 - Xcc-8004.4985.1 0.34 +0.9 4,731,727 - Xcc-8004.4985.1 0.34 -0.2 4,731,727 - Xcc-8004.4985.1 0.34 +0.1 4,731,727 - Xcc-8004.4985.1 0.34 +0.2 4,731,727 - Xcc-8004.4985.1 0.34 -1.1 4,731,738 + Xcc-8004.4985.1 0.35 -2.1 4,731,738 + Xcc-8004.4985.1 0.35 -1.3 4,731,739 - Xcc-8004.4985.1 0.36 +0.2 4,731,739 - Xcc-8004.4985.1 0.36 +1.0 4,731,739 - Xcc-8004.4985.1 0.36 -0.9 4,731,920 + Xcc-8004.4985.1 0.55 -1.1 4,731,920 + Xcc-8004.4985.1 0.55 -0.9 4,731,921 - Xcc-8004.4985.1 0.55 +0.2 4,731,931 + Xcc-8004.4985.1 0.56 -1.0 4,731,932 - Xcc-8004.4985.1 0.56 -1.6 4,731,932 - Xcc-8004.4985.1 0.56 +1.6 4,731,932 - Xcc-8004.4985.1 0.56 -0.4 4,731,932 - Xcc-8004.4985.1 0.56 +1.7 4,731,994 - Xcc-8004.4985.1 0.63 -2.6 4,731,994 - Xcc-8004.4985.1 0.63 -0.3 4,731,994 - Xcc-8004.4985.1 0.63 +0.4 4,731,994 - Xcc-8004.4985.1 0.63 -0.5 4,732,080 + Xcc-8004.4985.1 0.73 -0.5 4,732,080 + Xcc-8004.4985.1 0.73 +0.1 4,732,080 + Xcc-8004.4985.1 0.73 -0.2 4,732,080 + Xcc-8004.4985.1 0.73 -2.2 4,732,080 + Xcc-8004.4985.1 0.73 -0.0 4,732,080 + Xcc-8004.4985.1 0.73 -1.2 4,732,081 - Xcc-8004.4985.1 0.73 +1.6 4,732,081 - Xcc-8004.4985.1 0.73 -0.8 4,732,081 - Xcc-8004.4985.1 0.73 -1.7 4,732,081 - Xcc-8004.4985.1 0.73 +2.5 4,732,081 - Xcc-8004.4985.1 0.73 +0.3 4,732,081 - Xcc-8004.4985.1 0.73 +0.7 4,732,081 - Xcc-8004.4985.1 0.73 -1.4
Or see this region's nucleotide sequence