Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4407.1 and Xcc-8004.4409.1 are separated by 577 nucleotides Xcc-8004.4409.1 and Xcc-8004.4410.1 overlap by 19 nucleotides
Xcc-8004.4407.1: Xcc-8004.4407.1 - Nicotinate phosphoribosyltransferase (EC 2.4.2.11), at 4,215,549 to 4,216,745
Xcc-8004.4407.1
Xcc-8004.4409.1: Xcc-8004.4409.1 - FIG01211368: hypothetical protein, at 4,217,323 to 4,218,291
Xcc-8004.4409.1
Xcc-8004.4410.1: Xcc-8004.4410.1 - FIG01212107: hypothetical protein, at 4,218,273 to 4,219,616
Xcc-8004.4410.1
Position (kb) 4217
4218
4219 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4216.471 kb on + strand, within Xcc-8004.4407.1 at 4216.472 kb on - strand, within Xcc-8004.4407.1 at 4216.472 kb on - strand, within Xcc-8004.4407.1 at 4216.544 kb on - strand, within Xcc-8004.4407.1 at 4216.544 kb on - strand, within Xcc-8004.4407.1 at 4216.711 kb on + strand at 4216.854 kb on + strand at 4216.897 kb on + strand at 4216.897 kb on + strand at 4216.972 kb on + strand at 4216.973 kb on - strand at 4217.060 kb on - strand at 4217.129 kb on + strand at 4217.129 kb on + strand at 4217.167 kb on - strand at 4217.201 kb on + strand at 4217.258 kb on + strand at 4217.258 kb on + strand at 4217.311 kb on + strand at 4217.311 kb on + strand at 4217.315 kb on - strand at 4217.315 kb on - strand at 4217.315 kb on - strand at 4217.315 kb on - strand at 4217.324 kb on + strand at 4217.405 kb on + strand at 4217.405 kb on + strand at 4217.405 kb on + strand at 4217.406 kb on - strand at 4217.491 kb on - strand, within Xcc-8004.4409.1 at 4217.750 kb on + strand, within Xcc-8004.4409.1 at 4217.750 kb on + strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.751 kb on - strand, within Xcc-8004.4409.1 at 4217.769 kb on - strand, within Xcc-8004.4409.1 at 4217.769 kb on - strand, within Xcc-8004.4409.1 at 4217.904 kb on - strand, within Xcc-8004.4409.1 at 4218.263 kb on - strand at 4218.943 kb on + strand, within Xcc-8004.4410.1 at 4218.943 kb on + strand, within Xcc-8004.4410.1 at 4218.943 kb on + strand, within Xcc-8004.4410.1 at 4218.944 kb on - strand, within Xcc-8004.4410.1 at 4218.944 kb on - strand, within Xcc-8004.4410.1 at 4218.944 kb on - strand, within Xcc-8004.4410.1 at 4218.979 kb on + strand, within Xcc-8004.4410.1 at 4218.979 kb on + strand, within Xcc-8004.4410.1 at 4218.979 kb on + strand, within Xcc-8004.4410.1 at 4218.979 kb on + strand, within Xcc-8004.4410.1 at 4218.980 kb on - strand, within Xcc-8004.4410.1 at 4218.980 kb on - strand, within Xcc-8004.4410.1 at 4218.980 kb on - strand, within Xcc-8004.4410.1 at 4218.991 kb on + strand, within Xcc-8004.4410.1 at 4218.991 kb on + strand, within Xcc-8004.4410.1 at 4218.991 kb on + strand, within Xcc-8004.4410.1 at 4218.991 kb on + strand, within Xcc-8004.4410.1 at 4218.992 kb on - strand, within Xcc-8004.4410.1 at 4218.992 kb on - strand, within Xcc-8004.4410.1 at 4219.118 kb on + strand, within Xcc-8004.4410.1 at 4219.119 kb on - strand, within Xcc-8004.4410.1 at 4219.119 kb on - strand, within Xcc-8004.4410.1 at 4219.119 kb on - strand, within Xcc-8004.4410.1 at 4219.126 kb on + strand, within Xcc-8004.4410.1 at 4219.126 kb on + strand, within Xcc-8004.4410.1 at 4219.126 kb on + strand, within Xcc-8004.4410.1 at 4219.127 kb on - strand, within Xcc-8004.4410.1 at 4219.127 kb on - strand, within Xcc-8004.4410.1 at 4219.127 kb on - strand, within Xcc-8004.4410.1 at 4219.127 kb on - strand, within Xcc-8004.4410.1 at 4219.180 kb on + strand, within Xcc-8004.4410.1 at 4219.181 kb on - strand, within Xcc-8004.4410.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,216,471 + Xcc-8004.4407.1 0.77 -2.4 4,216,472 - Xcc-8004.4407.1 0.77 +1.0 4,216,472 - Xcc-8004.4407.1 0.77 +0.7 4,216,544 - Xcc-8004.4407.1 0.83 +0.2 4,216,544 - Xcc-8004.4407.1 0.83 +2.8 4,216,711 + +0.6 4,216,854 + +0.8 4,216,897 + -2.0 4,216,897 + -0.8 4,216,972 + -3.0 4,216,973 - +0.2 4,217,060 - -0.3 4,217,129 + +1.1 4,217,129 + +0.6 4,217,167 - -2.8 4,217,201 + +0.5 4,217,258 + +1.8 4,217,258 + -1.4 4,217,311 + +1.4 4,217,311 + +2.1 4,217,315 - +0.5 4,217,315 - -2.2 4,217,315 - +0.7 4,217,315 - -0.2 4,217,324 + -2.1 4,217,405 + +0.4 4,217,405 + -0.5 4,217,405 + -0.1 4,217,406 - +0.4 4,217,491 - Xcc-8004.4409.1 0.17 -0.3 4,217,750 + Xcc-8004.4409.1 0.44 -1.0 4,217,750 + Xcc-8004.4409.1 0.44 +2.5 4,217,751 - Xcc-8004.4409.1 0.44 +0.4 4,217,751 - Xcc-8004.4409.1 0.44 -0.2 4,217,751 - Xcc-8004.4409.1 0.44 +2.3 4,217,751 - Xcc-8004.4409.1 0.44 +1.1 4,217,751 - Xcc-8004.4409.1 0.44 -0.7 4,217,751 - Xcc-8004.4409.1 0.44 -0.6 4,217,769 - Xcc-8004.4409.1 0.46 +1.5 4,217,769 - Xcc-8004.4409.1 0.46 +1.9 4,217,904 - Xcc-8004.4409.1 0.60 -2.4 4,218,263 - -0.1 4,218,943 + Xcc-8004.4410.1 0.50 +1.3 4,218,943 + Xcc-8004.4410.1 0.50 -0.4 4,218,943 + Xcc-8004.4410.1 0.50 -1.2 4,218,944 - Xcc-8004.4410.1 0.50 +0.4 4,218,944 - Xcc-8004.4410.1 0.50 -1.6 4,218,944 - Xcc-8004.4410.1 0.50 +0.9 4,218,979 + Xcc-8004.4410.1 0.53 -0.4 4,218,979 + Xcc-8004.4410.1 0.53 +1.6 4,218,979 + Xcc-8004.4410.1 0.53 -0.5 4,218,979 + Xcc-8004.4410.1 0.53 +0.1 4,218,980 - Xcc-8004.4410.1 0.53 +0.4 4,218,980 - Xcc-8004.4410.1 0.53 +0.9 4,218,980 - Xcc-8004.4410.1 0.53 -3.3 4,218,991 + Xcc-8004.4410.1 0.53 -1.6 4,218,991 + Xcc-8004.4410.1 0.53 +1.2 4,218,991 + Xcc-8004.4410.1 0.53 +2.2 4,218,991 + Xcc-8004.4410.1 0.53 -2.7 4,218,992 - Xcc-8004.4410.1 0.53 +0.3 4,218,992 - Xcc-8004.4410.1 0.53 +0.0 4,219,118 + Xcc-8004.4410.1 0.63 -0.5 4,219,119 - Xcc-8004.4410.1 0.63 +1.8 4,219,119 - Xcc-8004.4410.1 0.63 -1.1 4,219,119 - Xcc-8004.4410.1 0.63 +3.1 4,219,126 + Xcc-8004.4410.1 0.63 -0.8 4,219,126 + Xcc-8004.4410.1 0.63 +0.5 4,219,126 + Xcc-8004.4410.1 0.63 -0.1 4,219,127 - Xcc-8004.4410.1 0.64 -0.3 4,219,127 - Xcc-8004.4410.1 0.64 -1.5 4,219,127 - Xcc-8004.4410.1 0.64 +1.4 4,219,127 - Xcc-8004.4410.1 0.64 +0.8 4,219,180 + Xcc-8004.4410.1 0.67 -1.5 4,219,181 - Xcc-8004.4410.1 0.68 -0.2
Or see this region's nucleotide sequence