Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4200.1 and Xcc-8004.4201.1 are separated by 65 nucleotides Xcc-8004.4201.1 and Xcc-8004.4203.1 are separated by 221 nucleotides Xcc-8004.4203.1 and Xcc-8004.4204.1 overlap by 4 nucleotides Xcc-8004.4204.1 and Xcc-8004.4205.1 overlap by 4 nucleotides
Xcc-8004.4200.1: Xcc-8004.4200.1 - probably aromatic ring hydroxylating enzyme, evidenced by COGnitor; PaaD-like protein (DUF59) involved in Fe-S cluster assembly, at 4,031,719 to 4,032,381
Xcc-8004.4200.1
Xcc-8004.4201.1: Xcc-8004.4201.1 - FIG01210375: hypothetical protein, at 4,032,447 to 4,032,866
Xcc-8004.4201.1
Xcc-8004.4203.1: Xcc-8004.4203.1 - RNA polymerase sigma-54 factor RpoN, at 4,033,088 to 4,033,780
Xcc-8004.4203.1
Xcc-8004.4204.1: Xcc-8004.4204.1 - FIG01210014: hypothetical protein, at 4,033,777 to 4,034,130
Xcc-8004.4204.1
Xcc-8004.4205.1: Xcc-8004.4205.1 - FIG01211065: hypothetical protein, at 4,034,127 to 4,034,615
Xcc-8004.4205.1
Position (kb) 4033
4034 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.270 kb on - strand, within Xcc-8004.4200.1 at 4032.319 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.419 kb on + strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.420 kb on - strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.825 kb on + strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.826 kb on - strand at 4032.864 kb on + strand at 4032.885 kb on + strand at 4032.885 kb on + strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.886 kb on - strand at 4032.948 kb on + strand at 4032.949 kb on - strand at 4033.048 kb on + strand at 4033.048 kb on + strand at 4033.049 kb on - strand at 4033.049 kb on - strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.072 kb on + strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.073 kb on - strand at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.193 kb on + strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.194 kb on - strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.211 kb on + strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.212 kb on - strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.592 kb on + strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.593 kb on - strand, within Xcc-8004.4203.1 at 4033.961 kb on + strand, within Xcc-8004.4204.1 at 4034.031 kb on + strand, within Xcc-8004.4204.1 at 4034.031 kb on + strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.032 kb on - strand, within Xcc-8004.4204.1 at 4034.644 kb on + strand at 4034.644 kb on + strand at 4034.645 kb on - strand at 4034.645 kb on - strand at 4034.645 kb on - strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.766 kb on + strand at 4034.767 kb on - strand at 4034.767 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 4,032,270 - Xcc-8004.4200.1 0.83 -3.1 4,032,270 - Xcc-8004.4200.1 0.83 -0.2 4,032,270 - Xcc-8004.4200.1 0.83 +1.3 4,032,270 - Xcc-8004.4200.1 0.83 -0.5 4,032,270 - Xcc-8004.4200.1 0.83 -2.4 4,032,319 + -0.7 4,032,419 + -0.5 4,032,419 + -2.1 4,032,419 + -1.6 4,032,419 + +0.8 4,032,419 + -1.5 4,032,419 + -0.5 4,032,420 - -0.2 4,032,420 - -0.9 4,032,420 - -2.2 4,032,420 - -0.8 4,032,420 - -2.4 4,032,420 - -1.1 4,032,420 - +0.0 4,032,825 + +0.1 4,032,825 + +1.1 4,032,825 + +0.5 4,032,825 + +3.6 4,032,825 + -0.5 4,032,825 + +0.1 4,032,825 + -1.4 4,032,825 + +1.0 4,032,825 + +0.9 4,032,825 + -2.9 4,032,825 + +3.3 4,032,826 - -0.9 4,032,826 - +0.0 4,032,826 - -1.7 4,032,826 - -0.0 4,032,826 - +0.7 4,032,826 - +2.0 4,032,826 - +0.6 4,032,826 - -1.3 4,032,826 - +0.1 4,032,826 - -2.3 4,032,826 - -2.4 4,032,826 - -0.6 4,032,826 - -1.1 4,032,826 - +0.7 4,032,826 - +0.2 4,032,864 + +0.3 4,032,885 + -0.1 4,032,885 + +0.3 4,032,886 - -0.1 4,032,886 - -0.4 4,032,886 - -1.9 4,032,948 + -1.2 4,032,949 - +0.6 4,033,048 + -0.5 4,033,048 + -0.2 4,033,049 - +0.4 4,033,049 - -0.4 4,033,072 + -0.3 4,033,072 + +0.5 4,033,072 + -3.1 4,033,072 + -0.2 4,033,072 + -0.1 4,033,072 + -0.2 4,033,072 + +0.8 4,033,072 + +0.3 4,033,072 + -0.6 4,033,073 - +1.3 4,033,073 - -0.1 4,033,073 - -0.5 4,033,073 - -1.4 4,033,073 - -0.9 4,033,073 - +1.0 4,033,073 - -1.0 4,033,073 - -2.2 4,033,073 - +0.3 4,033,073 - -0.7 4,033,073 - +1.3 4,033,073 - +0.0 4,033,073 - -0.7 4,033,073 - -0.4 4,033,073 - +1.3 4,033,193 + Xcc-8004.4203.1 0.15 +1.3 4,033,193 + Xcc-8004.4203.1 0.15 +0.6 4,033,193 + Xcc-8004.4203.1 0.15 +0.8 4,033,193 + Xcc-8004.4203.1 0.15 +0.7 4,033,193 + Xcc-8004.4203.1 0.15 -2.5 4,033,193 + Xcc-8004.4203.1 0.15 -0.2 4,033,193 + Xcc-8004.4203.1 0.15 +0.3 4,033,193 + Xcc-8004.4203.1 0.15 +0.9 4,033,193 + Xcc-8004.4203.1 0.15 -1.4 4,033,194 - Xcc-8004.4203.1 0.15 +2.3 4,033,194 - Xcc-8004.4203.1 0.15 -0.9 4,033,194 - Xcc-8004.4203.1 0.15 -1.0 4,033,194 - Xcc-8004.4203.1 0.15 -0.5 4,033,194 - Xcc-8004.4203.1 0.15 -0.6 4,033,211 + Xcc-8004.4203.1 0.18 -0.1 4,033,211 + Xcc-8004.4203.1 0.18 +1.0 4,033,211 + Xcc-8004.4203.1 0.18 +0.2 4,033,211 + Xcc-8004.4203.1 0.18 -1.8 4,033,211 + Xcc-8004.4203.1 0.18 -0.5 4,033,211 + Xcc-8004.4203.1 0.18 +1.1 4,033,211 + Xcc-8004.4203.1 0.18 -1.7 4,033,211 + Xcc-8004.4203.1 0.18 +0.9 4,033,211 + Xcc-8004.4203.1 0.18 -0.5 4,033,211 + Xcc-8004.4203.1 0.18 -1.8 4,033,212 - Xcc-8004.4203.1 0.18 -0.5 4,033,212 - Xcc-8004.4203.1 0.18 -1.4 4,033,212 - Xcc-8004.4203.1 0.18 -0.3 4,033,212 - Xcc-8004.4203.1 0.18 -0.8 4,033,212 - Xcc-8004.4203.1 0.18 -1.6 4,033,212 - Xcc-8004.4203.1 0.18 +0.7 4,033,212 - Xcc-8004.4203.1 0.18 -0.7 4,033,212 - Xcc-8004.4203.1 0.18 +0.6 4,033,212 - Xcc-8004.4203.1 0.18 -0.9 4,033,592 + Xcc-8004.4203.1 0.73 +0.6 4,033,592 + Xcc-8004.4203.1 0.73 -0.5 4,033,592 + Xcc-8004.4203.1 0.73 -1.0 4,033,592 + Xcc-8004.4203.1 0.73 +0.2 4,033,592 + Xcc-8004.4203.1 0.73 -0.1 4,033,592 + Xcc-8004.4203.1 0.73 +0.5 4,033,592 + Xcc-8004.4203.1 0.73 +3.6 4,033,592 + Xcc-8004.4203.1 0.73 +0.1 4,033,593 - Xcc-8004.4203.1 0.73 +0.4 4,033,593 - Xcc-8004.4203.1 0.73 -0.1 4,033,593 - Xcc-8004.4203.1 0.73 -0.5 4,033,593 - Xcc-8004.4203.1 0.73 +3.3 4,033,961 + Xcc-8004.4204.1 0.52 +0.8 4,034,031 + Xcc-8004.4204.1 0.72 -2.9 4,034,031 + Xcc-8004.4204.1 0.72 -2.1 4,034,032 - Xcc-8004.4204.1 0.72 +3.8 4,034,032 - Xcc-8004.4204.1 0.72 -1.4 4,034,032 - Xcc-8004.4204.1 0.72 -0.9 4,034,644 + +0.2 4,034,644 + -0.1 4,034,645 - +0.1 4,034,645 - +2.3 4,034,645 - +0.3 4,034,766 + -1.2 4,034,766 + +1.8 4,034,766 + +0.5 4,034,766 + -0.9 4,034,767 - +1.4 4,034,767 - +0.3
Or see this region's nucleotide sequence