Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3733.1 and Xcc-8004.3734.1 overlap by 14 nucleotides Xcc-8004.3734.1 and Xcc-8004.3735.1 are separated by 4 nucleotides Xcc-8004.3735.1 and Xcc-8004.3736.1 overlap by 4 nucleotides
Xcc-8004.3733.1: Xcc-8004.3733.1 - Type III secretion inner membrane protein (YscQ,homologous to flagellar export components), at 3,609,245 to 3,610,252
Xcc-8004.3733.1
Xcc-8004.3734.1: Xcc-8004.3734.1 - Type III secretion inner membrane protein (YscR,SpaR,HrcR,EscR,homologous to flagellar export components), at 3,610,239 to 3,610,883
Xcc-8004.3734.1
Xcc-8004.3735.1: Xcc-8004.3735.1 - Type III secretion inner membrane protein (YscS,homologous to flagellar export components), at 3,610,888 to 3,611,148
Xcc-8004.3735.1
Xcc-8004.3736.1: Xcc-8004.3736.1 - HpaA protein, at 3,611,145 to 3,611,960
Xcc-8004.3736.1
Position (kb) 3610
3611 Strain fitness (log2 ratio) -2
-1
0
1 at 3609.710 kb on - strand, within Xcc-8004.3733.1 at 3609.980 kb on - strand, within Xcc-8004.3733.1 at 3609.980 kb on - strand, within Xcc-8004.3733.1 at 3610.039 kb on - strand, within Xcc-8004.3733.1 at 3610.155 kb on - strand at 3610.312 kb on + strand, within Xcc-8004.3734.1 at 3610.312 kb on + strand, within Xcc-8004.3734.1 at 3610.312 kb on + strand, within Xcc-8004.3734.1 at 3610.510 kb on + strand, within Xcc-8004.3734.1 at 3610.511 kb on - strand, within Xcc-8004.3734.1 at 3610.511 kb on - strand, within Xcc-8004.3734.1 at 3610.716 kb on + strand, within Xcc-8004.3734.1 at 3610.717 kb on - strand, within Xcc-8004.3734.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,609,710 - Xcc-8004.3733.1 0.46 -2.3 3,609,980 - Xcc-8004.3733.1 0.73 +0.7 3,609,980 - Xcc-8004.3733.1 0.73 +0.9 3,610,039 - Xcc-8004.3733.1 0.79 -1.8 3,610,155 - -1.0 3,610,312 + Xcc-8004.3734.1 0.11 +0.8 3,610,312 + Xcc-8004.3734.1 0.11 +0.8 3,610,312 + Xcc-8004.3734.1 0.11 +1.1 3,610,510 + Xcc-8004.3734.1 0.42 -0.6 3,610,511 - Xcc-8004.3734.1 0.42 +1.7 3,610,511 - Xcc-8004.3734.1 0.42 -0.4 3,610,716 + Xcc-8004.3734.1 0.74 -1.9 3,610,717 - Xcc-8004.3734.1 0.74 -2.3
Or see this region's nucleotide sequence