Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3656.1 and Xcc-8004.3657.1 overlap by 4 nucleotides Xcc-8004.3657.1 and Xcc-8004.3658.1 overlap by 11 nucleotides Xcc-8004.3658.1 and Xcc-8004.3659.1 are separated by 95 nucleotides
Xcc-8004.3656.1: Xcc-8004.3656.1 - ATP-dependent DNA ligase (EC 6.5.1.1) LigC, at 3,534,276 to 3,535,880
Xcc-8004.3656.1
Xcc-8004.3657.1: Xcc-8004.3657.1 - FIG003033: Helicase domain protein, at 3,535,877 to 3,538,369
Xcc-8004.3657.1
Xcc-8004.3658.1: Xcc-8004.3658.1 - FIG006285: ICC-like protein phosphoesterase, at 3,538,359 to 3,539,003
Xcc-8004.3658.1
Xcc-8004.3659.1: Xcc-8004.3659.1 - Oxidoreductase, at 3,539,099 to 3,540,370
Xcc-8004.3659.1
Position (kb) 3535
3536
3537
3538
3539 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3535.242 kb on + strand, within Xcc-8004.3656.1 at 3535.242 kb on + strand, within Xcc-8004.3656.1 at 3535.243 kb on - strand, within Xcc-8004.3656.1 at 3535.459 kb on - strand, within Xcc-8004.3656.1 at 3535.533 kb on + strand, within Xcc-8004.3656.1 at 3535.533 kb on + strand, within Xcc-8004.3656.1 at 3535.534 kb on - strand, within Xcc-8004.3656.1 at 3535.570 kb on - strand, within Xcc-8004.3656.1 at 3535.578 kb on + strand, within Xcc-8004.3656.1 at 3535.629 kb on + strand, within Xcc-8004.3656.1 at 3535.986 kb on - strand at 3536.137 kb on + strand, within Xcc-8004.3657.1 at 3536.137 kb on + strand, within Xcc-8004.3657.1 at 3536.138 kb on - strand, within Xcc-8004.3657.1 at 3536.314 kb on + strand, within Xcc-8004.3657.1 at 3536.315 kb on - strand, within Xcc-8004.3657.1 at 3537.044 kb on + strand, within Xcc-8004.3657.1 at 3537.044 kb on + strand, within Xcc-8004.3657.1 at 3537.121 kb on - strand, within Xcc-8004.3657.1 at 3537.121 kb on - strand, within Xcc-8004.3657.1 at 3537.278 kb on + strand, within Xcc-8004.3657.1 at 3537.279 kb on - strand, within Xcc-8004.3657.1 at 3537.320 kb on + strand, within Xcc-8004.3657.1 at 3537.321 kb on - strand, within Xcc-8004.3657.1 at 3537.321 kb on - strand, within Xcc-8004.3657.1 at 3537.321 kb on - strand, within Xcc-8004.3657.1 at 3537.527 kb on + strand, within Xcc-8004.3657.1 at 3537.528 kb on - strand, within Xcc-8004.3657.1 at 3537.528 kb on - strand, within Xcc-8004.3657.1 at 3537.558 kb on + strand, within Xcc-8004.3657.1 at 3537.558 kb on + strand, within Xcc-8004.3657.1 at 3537.558 kb on + strand, within Xcc-8004.3657.1 at 3537.559 kb on - strand, within Xcc-8004.3657.1 at 3537.767 kb on + strand, within Xcc-8004.3657.1 at 3537.870 kb on - strand, within Xcc-8004.3657.1 at 3538.100 kb on + strand, within Xcc-8004.3657.1 at 3538.100 kb on + strand, within Xcc-8004.3657.1 at 3538.101 kb on - strand, within Xcc-8004.3657.1 at 3538.101 kb on - strand, within Xcc-8004.3657.1 at 3538.101 kb on - strand, within Xcc-8004.3657.1 at 3538.101 kb on - strand, within Xcc-8004.3657.1 at 3538.400 kb on - strand at 3539.100 kb on + strand at 3539.100 kb on + strand at 3539.126 kb on - strand at 3539.349 kb on + strand, within Xcc-8004.3659.1 at 3539.349 kb on + strand, within Xcc-8004.3659.1 at 3539.350 kb on - strand, within Xcc-8004.3659.1 at 3539.350 kb on - strand, within Xcc-8004.3659.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,535,242 + Xcc-8004.3656.1 0.60 -0.3 3,535,242 + Xcc-8004.3656.1 0.60 -1.4 3,535,243 - Xcc-8004.3656.1 0.60 +0.3 3,535,459 - Xcc-8004.3656.1 0.74 -0.8 3,535,533 + Xcc-8004.3656.1 0.78 -0.1 3,535,533 + Xcc-8004.3656.1 0.78 -0.2 3,535,534 - Xcc-8004.3656.1 0.78 +0.0 3,535,570 - Xcc-8004.3656.1 0.81 -1.7 3,535,578 + Xcc-8004.3656.1 0.81 -0.6 3,535,629 + Xcc-8004.3656.1 0.84 -2.0 3,535,986 - -0.9 3,536,137 + Xcc-8004.3657.1 0.10 -0.3 3,536,137 + Xcc-8004.3657.1 0.10 -1.1 3,536,138 - Xcc-8004.3657.1 0.10 -0.8 3,536,314 + Xcc-8004.3657.1 0.18 +0.8 3,536,315 - Xcc-8004.3657.1 0.18 -0.7 3,537,044 + Xcc-8004.3657.1 0.47 +0.1 3,537,044 + Xcc-8004.3657.1 0.47 -0.1 3,537,121 - Xcc-8004.3657.1 0.50 -0.8 3,537,121 - Xcc-8004.3657.1 0.50 +0.7 3,537,278 + Xcc-8004.3657.1 0.56 -0.4 3,537,279 - Xcc-8004.3657.1 0.56 -0.3 3,537,320 + Xcc-8004.3657.1 0.58 -1.3 3,537,321 - Xcc-8004.3657.1 0.58 -0.3 3,537,321 - Xcc-8004.3657.1 0.58 -0.7 3,537,321 - Xcc-8004.3657.1 0.58 -3.4 3,537,527 + Xcc-8004.3657.1 0.66 +1.9 3,537,528 - Xcc-8004.3657.1 0.66 -0.3 3,537,528 - Xcc-8004.3657.1 0.66 +3.3 3,537,558 + Xcc-8004.3657.1 0.67 +0.0 3,537,558 + Xcc-8004.3657.1 0.67 -0.1 3,537,558 + Xcc-8004.3657.1 0.67 -0.7 3,537,559 - Xcc-8004.3657.1 0.67 -0.3 3,537,767 + Xcc-8004.3657.1 0.76 -2.2 3,537,870 - Xcc-8004.3657.1 0.80 -1.1 3,538,100 + Xcc-8004.3657.1 0.89 -0.2 3,538,100 + Xcc-8004.3657.1 0.89 -0.0 3,538,101 - Xcc-8004.3657.1 0.89 +0.4 3,538,101 - Xcc-8004.3657.1 0.89 -0.4 3,538,101 - Xcc-8004.3657.1 0.89 -1.7 3,538,101 - Xcc-8004.3657.1 0.89 -1.2 3,538,400 - +2.4 3,539,100 + -0.1 3,539,100 + -0.3 3,539,126 - -1.0 3,539,349 + Xcc-8004.3659.1 0.20 +1.2 3,539,349 + Xcc-8004.3659.1 0.20 -1.0 3,539,350 - Xcc-8004.3659.1 0.20 +1.7 3,539,350 - Xcc-8004.3659.1 0.20 +1.9
Or see this region's nucleotide sequence