Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3331.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3329.1 and Xcc-8004.3330.1 overlap by 4 nucleotidesXcc-8004.3330.1 and Xcc-8004.3331.1 are separated by 112 nucleotidesXcc-8004.3331.1 and Xcc-8004.3332.1 are separated by 36 nucleotidesXcc-8004.3332.1 and Xcc-8004.3333.1 overlap by 4 nucleotides Xcc-8004.3329.1: Xcc-8004.3329.1 - Exodeoxyribonuclease I (EC 3.1.11.1), at 3,229,062 to 3,230,507 Xcc-8004.3329.1 Xcc-8004.3330.1: Xcc-8004.3330.1 - FIG01212834: hypothetical protein, at 3,230,504 to 3,231,190 Xcc-8004.3330.1 Xcc-8004.3331.1: Xcc-8004.3331.1 - FIG01210780: hypothetical protein, at 3,231,303 to 3,231,875 Xcc-8004.3331.1 Xcc-8004.3332.1: Xcc-8004.3332.1 - Spermidine synthase (EC 2.5.1.16), at 3,231,912 to 3,232,655 Xcc-8004.3332.1 Xcc-8004.3333.1: Xcc-8004.3333.1 - 5'-nucleotidase (EC 3.1.3.5), at 3,232,652 to 3,233,617 Xcc-8004.3333.1 Position (kb) 3231 3232Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3230.340 kb on + strand, within Xcc-8004.3329.1at 3230.444 kb on + strandat 3230.445 kb on - strandat 3230.504 kb on - strandat 3230.514 kb on - strandat 3230.514 kb on - strandat 3230.720 kb on + strand, within Xcc-8004.3330.1at 3230.720 kb on + strand, within Xcc-8004.3330.1at 3230.721 kb on - strand, within Xcc-8004.3330.1at 3230.721 kb on - strand, within Xcc-8004.3330.1at 3230.822 kb on + strand, within Xcc-8004.3330.1at 3230.822 kb on + strand, within Xcc-8004.3330.1at 3230.823 kb on - strand, within Xcc-8004.3330.1at 3231.065 kb on + strand, within Xcc-8004.3330.1at 3231.065 kb on + strand, within Xcc-8004.3330.1at 3231.272 kb on + strandat 3231.272 kb on + strandat 3231.272 kb on + strandat 3231.272 kb on + strandat 3231.375 kb on + strand, within Xcc-8004.3331.1at 3231.376 kb on - strand, within Xcc-8004.3331.1at 3231.489 kb on + strand, within Xcc-8004.3331.1at 3231.490 kb on - strand, within Xcc-8004.3331.1at 3231.675 kb on + strand, within Xcc-8004.3331.1at 3231.675 kb on + strand, within Xcc-8004.3331.1at 3231.913 kb on + strandat 3232.037 kb on + strand, within Xcc-8004.3332.1at 3232.205 kb on - strand, within Xcc-8004.3332.1at 3232.205 kb on - strand, within Xcc-8004.3332.1at 3232.249 kb on + strand, within Xcc-8004.3332.1at 3232.250 kb on - strand, within Xcc-8004.3332.1at 3232.263 kb on + strand, within Xcc-8004.3332.1at 3232.263 kb on + strand, within Xcc-8004.3332.1at 3232.264 kb on - strand, within Xcc-8004.3332.1at 3232.273 kb on + strand, within Xcc-8004.3332.1at 3232.273 kb on + strand, within Xcc-8004.3332.1at 3232.273 kb on + strand, within Xcc-8004.3332.1at 3232.492 kb on - strand, within Xcc-8004.3332.1at 3232.520 kb on + strand, within Xcc-8004.3332.1at 3232.521 kb on - strand, within Xcc-8004.3332.1at 3232.521 kb on - strand, within Xcc-8004.3332.1at 3232.521 kb on - strand, within Xcc-8004.3332.1at 3232.521 kb on - strand, within Xcc-8004.3332.1at 3232.522 kb on + strand, within Xcc-8004.3332.1at 3232.759 kb on + strand, within Xcc-8004.3333.1at 3232.760 kb on - strand, within Xcc-8004.3333.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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3,230,340 + Xcc-8004.3329.1 0.88 -1.0
3,230,444 + +0.2
3,230,445 - +0.6
3,230,504 - +0.2
3,230,514 - -1.0
3,230,514 - +1.9
3,230,720 + Xcc-8004.3330.1 0.31 -0.3
3,230,720 + Xcc-8004.3330.1 0.31 +0.0
3,230,721 - Xcc-8004.3330.1 0.32 +0.7
3,230,721 - Xcc-8004.3330.1 0.32 +0.7
3,230,822 + Xcc-8004.3330.1 0.46 -1.4
3,230,822 + Xcc-8004.3330.1 0.46 +1.3
3,230,823 - Xcc-8004.3330.1 0.46 +0.6
3,231,065 + Xcc-8004.3330.1 0.82 +0.8
3,231,065 + Xcc-8004.3330.1 0.82 +1.6
3,231,272 + +0.1
3,231,272 + +0.1
3,231,272 + +0.8
3,231,272 + -0.1
3,231,375 + Xcc-8004.3331.1 0.13 +4.3
3,231,376 - Xcc-8004.3331.1 0.13 -0.7
3,231,489 + Xcc-8004.3331.1 0.32 +0.5
3,231,490 - Xcc-8004.3331.1 0.33 +0.2
3,231,675 + Xcc-8004.3331.1 0.65 +0.4
3,231,675 + Xcc-8004.3331.1 0.65 +1.9
3,231,913 + -0.2
3,232,037 + Xcc-8004.3332.1 0.17 -1.3
3,232,205 - Xcc-8004.3332.1 0.39 +0.7
3,232,205 - Xcc-8004.3332.1 0.39 -0.7
3,232,249 + Xcc-8004.3332.1 0.45 +0.4
3,232,250 - Xcc-8004.3332.1 0.45 -2.2
3,232,263 + Xcc-8004.3332.1 0.47 +0.9
3,232,263 + Xcc-8004.3332.1 0.47 +0.6
3,232,264 - Xcc-8004.3332.1 0.47 -0.1
3,232,273 + Xcc-8004.3332.1 0.49 +0.2
3,232,273 + Xcc-8004.3332.1 0.49 +0.0
3,232,273 + Xcc-8004.3332.1 0.49 +0.9
3,232,492 - Xcc-8004.3332.1 0.78 +0.7
3,232,520 + Xcc-8004.3332.1 0.82 -0.8
3,232,521 - Xcc-8004.3332.1 0.82 +1.2
3,232,521 - Xcc-8004.3332.1 0.82 +0.2
3,232,521 - Xcc-8004.3332.1 0.82 -1.4
3,232,521 - Xcc-8004.3332.1 0.82 +0.5
3,232,522 + Xcc-8004.3332.1 0.82 -0.7
3,232,759 + Xcc-8004.3333.1 0.11 -1.4
3,232,760 - Xcc-8004.3333.1 0.11 -0.1

Or see this region's nucleotide sequence