Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3185.1 and Xcc-8004.3187.1 are separated by 8 nucleotides Xcc-8004.3187.1 and Xcc-8004.3188.1 overlap by 4 nucleotides Xcc-8004.3188.1 and Xcc-8004.3189.1 overlap by 4 nucleotides Xcc-8004.3189.1 and Xcc-8004.3190.1 are separated by 66 nucleotides
Xcc-8004.3185.1: Xcc-8004.3185.1 - serine protease, at 3,101,551 to 3,102,867
Xcc-8004.3185.1
Xcc-8004.3187.1: Xcc-8004.3187.1 - Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE, at 3,102,876 to 3,103,634
Xcc-8004.3187.1
Xcc-8004.3188.1: Xcc-8004.3188.1 - Cytochrome c-type biogenesis protein CcmD, interacts with CcmCE, at 3,103,631 to 3,103,834
Xcc-8004.3188.1
Xcc-8004.3189.1: Xcc-8004.3189.1 - Cytochrome c-type biogenesis protein CcmE, heme chaperone, at 3,103,831 to 3,104,301
Xcc-8004.3189.1
Xcc-8004.3190.1: Xcc-8004.3190.1 - Cytochrome c heme lyase subunit CcmF, at 3,104,368 to 3,106,365
Xcc-8004.3190.1
Position (kb) 3103
3104
3105 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3102.931 kb on - strand at 3103.012 kb on + strand, within Xcc-8004.3187.1 at 3103.098 kb on + strand, within Xcc-8004.3187.1 at 3103.099 kb on - strand, within Xcc-8004.3187.1 at 3103.302 kb on + strand, within Xcc-8004.3187.1 at 3103.302 kb on + strand, within Xcc-8004.3187.1 at 3103.323 kb on + strand, within Xcc-8004.3187.1 at 3103.323 kb on + strand, within Xcc-8004.3187.1 at 3103.410 kb on + strand, within Xcc-8004.3187.1 at 3103.411 kb on - strand, within Xcc-8004.3187.1 at 3103.530 kb on + strand, within Xcc-8004.3187.1 at 3103.530 kb on + strand, within Xcc-8004.3187.1 at 3103.531 kb on - strand, within Xcc-8004.3187.1 at 3103.531 kb on - strand, within Xcc-8004.3187.1 at 3103.531 kb on - strand, within Xcc-8004.3187.1 at 3103.533 kb on + strand, within Xcc-8004.3187.1 at 3103.533 kb on + strand, within Xcc-8004.3187.1 at 3103.534 kb on - strand, within Xcc-8004.3187.1 at 3103.667 kb on + strand, within Xcc-8004.3188.1 at 3103.668 kb on - strand, within Xcc-8004.3188.1 at 3103.683 kb on - strand, within Xcc-8004.3188.1 at 3103.683 kb on - strand, within Xcc-8004.3188.1 at 3103.839 kb on + strand at 3103.839 kb on + strand at 3103.839 kb on + strand at 3103.845 kb on + strand at 3103.845 kb on + strand at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.936 kb on + strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3103.937 kb on - strand, within Xcc-8004.3189.1 at 3104.095 kb on + strand, within Xcc-8004.3189.1 at 3104.095 kb on + strand, within Xcc-8004.3189.1 at 3104.095 kb on + strand, within Xcc-8004.3189.1 at 3104.096 kb on - strand, within Xcc-8004.3189.1 at 3104.096 kb on - strand, within Xcc-8004.3189.1 at 3104.209 kb on + strand, within Xcc-8004.3189.1 at 3104.209 kb on + strand, within Xcc-8004.3189.1 at 3104.209 kb on + strand, within Xcc-8004.3189.1 at 3104.209 kb on + strand, within Xcc-8004.3189.1 at 3104.209 kb on + strand, within Xcc-8004.3189.1 at 3104.210 kb on - strand, within Xcc-8004.3189.1 at 3104.210 kb on - strand, within Xcc-8004.3189.1 at 3104.210 kb on - strand, within Xcc-8004.3189.1 at 3104.575 kb on + strand, within Xcc-8004.3190.1 at 3104.575 kb on + strand, within Xcc-8004.3190.1 at 3104.575 kb on + strand, within Xcc-8004.3190.1 at 3104.576 kb on - strand, within Xcc-8004.3190.1 at 3104.611 kb on + strand, within Xcc-8004.3190.1 at 3104.614 kb on + strand, within Xcc-8004.3190.1 at 3104.615 kb on - strand, within Xcc-8004.3190.1 at 3104.896 kb on + strand, within Xcc-8004.3190.1 at 3104.897 kb on - strand, within Xcc-8004.3190.1 at 3104.897 kb on - strand, within Xcc-8004.3190.1 at 3104.905 kb on + strand, within Xcc-8004.3190.1 at 3104.906 kb on - strand, within Xcc-8004.3190.1 at 3104.906 kb on - strand, within Xcc-8004.3190.1 at 3104.906 kb on - strand, within Xcc-8004.3190.1 at 3105.055 kb on + strand, within Xcc-8004.3190.1 at 3105.056 kb on - strand, within Xcc-8004.3190.1 at 3105.147 kb on + strand, within Xcc-8004.3190.1 at 3105.235 kb on - strand, within Xcc-8004.3190.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,102,931 - +1.4 3,103,012 + Xcc-8004.3187.1 0.18 -1.2 3,103,098 + Xcc-8004.3187.1 0.29 -1.1 3,103,099 - Xcc-8004.3187.1 0.29 -0.5 3,103,302 + Xcc-8004.3187.1 0.56 -0.9 3,103,302 + Xcc-8004.3187.1 0.56 +0.3 3,103,323 + Xcc-8004.3187.1 0.59 -0.6 3,103,323 + Xcc-8004.3187.1 0.59 -0.3 3,103,410 + Xcc-8004.3187.1 0.70 -0.3 3,103,411 - Xcc-8004.3187.1 0.70 -0.9 3,103,530 + Xcc-8004.3187.1 0.86 -1.2 3,103,530 + Xcc-8004.3187.1 0.86 -1.5 3,103,531 - Xcc-8004.3187.1 0.86 -1.4 3,103,531 - Xcc-8004.3187.1 0.86 +0.8 3,103,531 - Xcc-8004.3187.1 0.86 +0.3 3,103,533 + Xcc-8004.3187.1 0.87 -1.3 3,103,533 + Xcc-8004.3187.1 0.87 +0.6 3,103,534 - Xcc-8004.3187.1 0.87 -3.1 3,103,667 + Xcc-8004.3188.1 0.18 -1.4 3,103,668 - Xcc-8004.3188.1 0.18 -0.2 3,103,683 - Xcc-8004.3188.1 0.25 +0.8 3,103,683 - Xcc-8004.3188.1 0.25 -2.3 3,103,839 + -1.8 3,103,839 + -2.3 3,103,839 + +0.2 3,103,845 + -0.5 3,103,845 + -0.9 3,103,936 + Xcc-8004.3189.1 0.22 -0.6 3,103,936 + Xcc-8004.3189.1 0.22 -1.7 3,103,936 + Xcc-8004.3189.1 0.22 +0.3 3,103,936 + Xcc-8004.3189.1 0.22 -0.9 3,103,936 + Xcc-8004.3189.1 0.22 -0.9 3,103,936 + Xcc-8004.3189.1 0.22 +0.5 3,103,937 - Xcc-8004.3189.1 0.23 -0.4 3,103,937 - Xcc-8004.3189.1 0.23 +0.6 3,103,937 - Xcc-8004.3189.1 0.23 -2.3 3,103,937 - Xcc-8004.3189.1 0.23 -1.6 3,103,937 - Xcc-8004.3189.1 0.23 +0.7 3,103,937 - Xcc-8004.3189.1 0.23 -0.4 3,104,095 + Xcc-8004.3189.1 0.56 -1.3 3,104,095 + Xcc-8004.3189.1 0.56 -0.3 3,104,095 + Xcc-8004.3189.1 0.56 -0.6 3,104,096 - Xcc-8004.3189.1 0.56 -0.6 3,104,096 - Xcc-8004.3189.1 0.56 -0.7 3,104,209 + Xcc-8004.3189.1 0.80 -0.8 3,104,209 + Xcc-8004.3189.1 0.80 +0.8 3,104,209 + Xcc-8004.3189.1 0.80 -0.8 3,104,209 + Xcc-8004.3189.1 0.80 +0.5 3,104,209 + Xcc-8004.3189.1 0.80 +0.6 3,104,210 - Xcc-8004.3189.1 0.80 -1.8 3,104,210 - Xcc-8004.3189.1 0.80 -1.5 3,104,210 - Xcc-8004.3189.1 0.80 -0.5 3,104,575 + Xcc-8004.3190.1 0.10 +0.6 3,104,575 + Xcc-8004.3190.1 0.10 +0.9 3,104,575 + Xcc-8004.3190.1 0.10 -0.9 3,104,576 - Xcc-8004.3190.1 0.10 -1.0 3,104,611 + Xcc-8004.3190.1 0.12 +2.3 3,104,614 + Xcc-8004.3190.1 0.12 -1.8 3,104,615 - Xcc-8004.3190.1 0.12 +0.2 3,104,896 + Xcc-8004.3190.1 0.26 -2.0 3,104,897 - Xcc-8004.3190.1 0.26 -2.1 3,104,897 - Xcc-8004.3190.1 0.26 -1.1 3,104,905 + Xcc-8004.3190.1 0.27 +0.1 3,104,906 - Xcc-8004.3190.1 0.27 +0.5 3,104,906 - Xcc-8004.3190.1 0.27 -1.2 3,104,906 - Xcc-8004.3190.1 0.27 -1.0 3,105,055 + Xcc-8004.3190.1 0.34 +3.2 3,105,056 - Xcc-8004.3190.1 0.34 +1.6 3,105,147 + Xcc-8004.3190.1 0.39 -0.3 3,105,235 - Xcc-8004.3190.1 0.43 -1.4
Or see this region's nucleotide sequence