Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3153.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3151.1 and Xcc-8004.3153.1 are separated by 54 nucleotidesXcc-8004.3153.1 and Xcc-8004.3154.1 are separated by 229 nucleotides Xcc-8004.3151.1: Xcc-8004.3151.1 - Carboxypeptidase C (cathepsin A), at 3,069,386 to 3,070,882 Xcc-8004.3151.1 Xcc-8004.3153.1: Xcc-8004.3153.1 - FIG01212307: hypothetical protein, at 3,070,937 to 3,071,698 Xcc-8004.3153.1 Xcc-8004.3154.1: Xcc-8004.3154.1 - Probable low-affinity inorganic phosphate transporter, at 3,071,928 to 3,073,055 Xcc-8004.3154.1 Position (kb) 3070 3071 3072Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.948 kb on - strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.989 kb on + strand, within Xcc-8004.3151.1at 3069.990 kb on - strand, within Xcc-8004.3151.1at 3069.990 kb on - strand, within Xcc-8004.3151.1at 3070.007 kb on + strand, within Xcc-8004.3151.1at 3070.007 kb on + strand, within Xcc-8004.3151.1at 3070.008 kb on - strand, within Xcc-8004.3151.1at 3070.040 kb on + strand, within Xcc-8004.3151.1at 3070.229 kb on + strand, within Xcc-8004.3151.1at 3070.230 kb on - strand, within Xcc-8004.3151.1at 3070.230 kb on - strand, within Xcc-8004.3151.1at 3070.245 kb on - strand, within Xcc-8004.3151.1at 3070.337 kb on + strand, within Xcc-8004.3151.1at 3070.337 kb on + strand, within Xcc-8004.3151.1at 3070.337 kb on + strand, within Xcc-8004.3151.1at 3070.338 kb on - strand, within Xcc-8004.3151.1at 3070.376 kb on + strand, within Xcc-8004.3151.1at 3070.377 kb on - strand, within Xcc-8004.3151.1at 3070.377 kb on - strand, within Xcc-8004.3151.1at 3070.571 kb on + strand, within Xcc-8004.3151.1at 3070.586 kb on + strand, within Xcc-8004.3151.1at 3070.586 kb on + strand, within Xcc-8004.3151.1at 3070.587 kb on - strand, within Xcc-8004.3151.1at 3070.587 kb on - strand, within Xcc-8004.3151.1at 3070.587 kb on - strand, within Xcc-8004.3151.1at 3070.587 kb on - strand, within Xcc-8004.3151.1at 3070.587 kb on - strand, within Xcc-8004.3151.1at 3070.817 kb on + strandat 3070.818 kb on - strandat 3070.818 kb on - strandat 3070.818 kb on - strandat 3070.868 kb on + strandat 3070.868 kb on + strandat 3070.869 kb on - strandat 3070.869 kb on - strandat 3070.869 kb on - strandat 3070.869 kb on - strandat 3070.987 kb on - strandat 3071.013 kb on + strandat 3071.013 kb on + strandat 3071.049 kb on + strand, within Xcc-8004.3153.1at 3071.049 kb on + strand, within Xcc-8004.3153.1at 3071.050 kb on - strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.130 kb on + strand, within Xcc-8004.3153.1at 3071.131 kb on - strand, within Xcc-8004.3153.1at 3071.131 kb on - strand, within Xcc-8004.3153.1at 3071.131 kb on - strand, within Xcc-8004.3153.1at 3071.301 kb on + strand, within Xcc-8004.3153.1at 3071.421 kb on + strand, within Xcc-8004.3153.1at 3071.800 kb on - strandat 3071.800 kb on - strandat 3071.800 kb on - strandat 3071.842 kb on + strandat 3071.842 kb on + strandat 3071.842 kb on + strandat 3071.842 kb on + strandat 3071.842 kb on + strandat 3071.843 kb on - strandat 3071.843 kb on - strandat 3071.843 kb on - strandat 3071.968 kb on + strandat 3071.968 kb on + strandat 3071.969 kb on - strandat 3071.969 kb on - strandat 3071.969 kb on - strandat 3071.969 kb on - strandat 3072.419 kb on + strand, within Xcc-8004.3154.1at 3072.442 kb on + strand, within Xcc-8004.3154.1at 3072.442 kb on + strand, within Xcc-8004.3154.1at 3072.442 kb on + strand, within Xcc-8004.3154.1at 3072.442 kb on + strand, within Xcc-8004.3154.1at 3072.443 kb on - strand, within Xcc-8004.3154.1at 3072.443 kb on - strand, within Xcc-8004.3154.1at 3072.443 kb on - strand, within Xcc-8004.3154.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
remove
3,069,948 - Xcc-8004.3151.1 0.38 -0.9
3,069,948 - Xcc-8004.3151.1 0.38 -0.1
3,069,948 - Xcc-8004.3151.1 0.38 -1.3
3,069,948 - Xcc-8004.3151.1 0.38 +0.5
3,069,989 + Xcc-8004.3151.1 0.40 +0.2
3,069,989 + Xcc-8004.3151.1 0.40 -0.2
3,069,989 + Xcc-8004.3151.1 0.40 -0.8
3,069,990 - Xcc-8004.3151.1 0.40 -1.0
3,069,990 - Xcc-8004.3151.1 0.40 +1.2
3,070,007 + Xcc-8004.3151.1 0.41 -0.3
3,070,007 + Xcc-8004.3151.1 0.41 -0.6
3,070,008 - Xcc-8004.3151.1 0.42 +0.2
3,070,040 + Xcc-8004.3151.1 0.44 -1.3
3,070,229 + Xcc-8004.3151.1 0.56 -0.0
3,070,230 - Xcc-8004.3151.1 0.56 +1.1
3,070,230 - Xcc-8004.3151.1 0.56 -0.3
3,070,245 - Xcc-8004.3151.1 0.57 +0.2
3,070,337 + Xcc-8004.3151.1 0.64 +1.0
3,070,337 + Xcc-8004.3151.1 0.64 +1.3
3,070,337 + Xcc-8004.3151.1 0.64 -0.5
3,070,338 - Xcc-8004.3151.1 0.64 +0.6
3,070,376 + Xcc-8004.3151.1 0.66 -2.0
3,070,377 - Xcc-8004.3151.1 0.66 +0.3
3,070,377 - Xcc-8004.3151.1 0.66 -1.0
3,070,571 + Xcc-8004.3151.1 0.79 -0.1
3,070,586 + Xcc-8004.3151.1 0.80 +1.1
3,070,586 + Xcc-8004.3151.1 0.80 -2.2
3,070,587 - Xcc-8004.3151.1 0.80 -0.1
3,070,587 - Xcc-8004.3151.1 0.80 -1.1
3,070,587 - Xcc-8004.3151.1 0.80 -0.5
3,070,587 - Xcc-8004.3151.1 0.80 +1.3
3,070,587 - Xcc-8004.3151.1 0.80 -2.2
3,070,817 + -2.4
3,070,818 - -1.1
3,070,818 - +0.8
3,070,818 - -0.7
3,070,868 + +1.1
3,070,868 + +0.3
3,070,869 - -1.8
3,070,869 - +0.2
3,070,869 - +0.5
3,070,869 - +0.2
3,070,987 - +0.7
3,071,013 + -0.4
3,071,013 + +0.2
3,071,049 + Xcc-8004.3153.1 0.15 -2.4
3,071,049 + Xcc-8004.3153.1 0.15 -0.1
3,071,050 - Xcc-8004.3153.1 0.15 +0.9
3,071,130 + Xcc-8004.3153.1 0.25 -1.5
3,071,130 + Xcc-8004.3153.1 0.25 -0.5
3,071,130 + Xcc-8004.3153.1 0.25 +1.5
3,071,130 + Xcc-8004.3153.1 0.25 +0.2
3,071,130 + Xcc-8004.3153.1 0.25 +2.5
3,071,130 + Xcc-8004.3153.1 0.25 +0.3
3,071,131 - Xcc-8004.3153.1 0.25 -0.8
3,071,131 - Xcc-8004.3153.1 0.25 +0.1
3,071,131 - Xcc-8004.3153.1 0.25 +1.6
3,071,301 + Xcc-8004.3153.1 0.48 -0.5
3,071,421 + Xcc-8004.3153.1 0.64 -2.8
3,071,800 - -0.5
3,071,800 - +0.7
3,071,800 - +2.3
3,071,842 + +1.3
3,071,842 + -1.3
3,071,842 + -0.5
3,071,842 + -1.2
3,071,842 + -1.7
3,071,843 - -1.7
3,071,843 - -0.1
3,071,843 - +1.6
3,071,968 + +0.5
3,071,968 + +0.9
3,071,969 - -0.9
3,071,969 - -0.2
3,071,969 - +0.9
3,071,969 - +2.7
3,072,419 + Xcc-8004.3154.1 0.44 +2.1
3,072,442 + Xcc-8004.3154.1 0.46 +0.9
3,072,442 + Xcc-8004.3154.1 0.46 +0.5
3,072,442 + Xcc-8004.3154.1 0.46 -0.3
3,072,442 + Xcc-8004.3154.1 0.46 +0.3
3,072,443 - Xcc-8004.3154.1 0.46 -0.1
3,072,443 - Xcc-8004.3154.1 0.46 -0.5
3,072,443 - Xcc-8004.3154.1 0.46 -2.9

Or see this region's nucleotide sequence