Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3141.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotidesXcc-8004.3140.1 and Xcc-8004.3141.1 are separated by 3 nucleotidesXcc-8004.3141.1 and Xcc-8004.3143.1 are separated by 125 nucleotidesXcc-8004.3143.1 and Xcc-8004.3144.1 overlap by 4 nucleotides Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683 Xcc-8004.3139.1 Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045 Xcc-8004.3140.1 Xcc-8004.3141.1: Xcc-8004.3141.1 - Enolase (EC 4.2.1.11), at 3,061,049 to 3,062,341 Xcc-8004.3141.1 Xcc-8004.3143.1: Xcc-8004.3143.1 - FIG01273326: hypothetical protein, at 3,062,467 to 3,062,829 Xcc-8004.3143.1 Xcc-8004.3144.1: Xcc-8004.3144.1 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 3,062,826 to 3,063,656 Xcc-8004.3144.1 Position (kb) 3061 3062 3063Strain fitness (log2 ratio) -1 0 1 2at 3060.693 kb on - strandat 3060.693 kb on - strandat 3062.342 kb on - strandat 3062.362 kb on - strandat 3062.362 kb on - strandat 3062.374 kb on - strandat 3062.374 kb on - strandat 3062.374 kb on - strandat 3062.374 kb on - strandat 3062.374 kb on - strandat 3062.374 kb on - strandat 3062.398 kb on - strandat 3062.468 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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3,060,693 - -1.4
3,060,693 - +1.9
3,062,342 - -0.8
3,062,362 - +0.8
3,062,362 - -0.5
3,062,374 - -0.1
3,062,374 - -1.7
3,062,374 - -0.5
3,062,374 - +1.2
3,062,374 - +0.7
3,062,374 - +0.1
3,062,398 - +0.4
3,062,468 + +1.1

Or see this region's nucleotide sequence