Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3139.1 and Xcc-8004.3140.1 overlap by 4 nucleotides Xcc-8004.3140.1 and Xcc-8004.3141.1 are separated by 3 nucleotides Xcc-8004.3141.1 and Xcc-8004.3143.1 are separated by 125 nucleotides Xcc-8004.3143.1 and Xcc-8004.3144.1 overlap by 4 nucleotides
Xcc-8004.3139.1: Xcc-8004.3139.1 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC 2.7.7.60), at 3,059,886 to 3,060,683
Xcc-8004.3139.1
Xcc-8004.3140.1: Xcc-8004.3140.1 - Cell division protein DivIC (FtsB), stabilizes FtsL against RasP cleavage, at 3,060,680 to 3,061,045
Xcc-8004.3140.1
Xcc-8004.3141.1: Xcc-8004.3141.1 - Enolase (EC 4.2.1.11), at 3,061,049 to 3,062,341
Xcc-8004.3141.1
Xcc-8004.3143.1: Xcc-8004.3143.1 - FIG01273326: hypothetical protein, at 3,062,467 to 3,062,829
Xcc-8004.3143.1
Xcc-8004.3144.1: Xcc-8004.3144.1 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 3,062,826 to 3,063,656
Xcc-8004.3144.1
Position (kb)
3061
3062
3063 Strain fitness (log2 ratio)
-1
0
1
2 at 3060.693 kb on - strand at 3060.693 kb on - strand at 3062.342 kb on - strand at 3062.362 kb on - strand at 3062.362 kb on - strand at 3062.374 kb on - strand at 3062.374 kb on - strand at 3062.374 kb on - strand at 3062.374 kb on - strand at 3062.374 kb on - strand at 3062.374 kb on - strand at 3062.398 kb on - strand at 3062.468 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 3,060,693 - -1.4 3,060,693 - +1.9 3,062,342 - -0.8 3,062,362 - +0.8 3,062,362 - -0.5 3,062,374 - -0.1 3,062,374 - -1.7 3,062,374 - -0.5 3,062,374 - +1.2 3,062,374 - +0.7 3,062,374 - +0.1 3,062,398 - +0.4 3,062,468 + +1.1
Or see this region's nucleotide sequence