Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2926.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2924.1 and Xcc-8004.2925.1 are separated by 100 nucleotidesXcc-8004.2925.1 and Xcc-8004.2926.1 are separated by 1 nucleotidesXcc-8004.2926.1 and Xcc-8004.2927.1 are separated by 248 nucleotides Xcc-8004.2924.1: Xcc-8004.2924.1 - Short-chain dehydrogenase/reductase SDR, at 2,848,728 to 2,849,498 Xcc-8004.2924.1 Xcc-8004.2925.1: Xcc-8004.2925.1 - Translation elongation factor P-related protein, at 2,849,599 to 2,850,165 Xcc-8004.2925.1 Xcc-8004.2926.1: Xcc-8004.2926.1 - FIG01210103: hypothetical protein, at 2,850,167 to 2,850,568 Xcc-8004.2926.1 Xcc-8004.2927.1: Xcc-8004.2927.1 - FIG01210489: hypothetical protein, at 2,850,817 to 2,852,682 Xcc-8004.2927.1 Position (kb) 2850 2851Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2849.184 kb on + strand, within Xcc-8004.2924.1at 2849.184 kb on + strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.185 kb on - strand, within Xcc-8004.2924.1at 2849.211 kb on + strand, within Xcc-8004.2924.1at 2849.212 kb on - strand, within Xcc-8004.2924.1at 2849.212 kb on - strand, within Xcc-8004.2924.1at 2849.406 kb on + strand, within Xcc-8004.2924.1at 2849.442 kb on + strandat 2849.442 kb on + strandat 2849.443 kb on - strandat 2849.496 kb on + strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.497 kb on - strandat 2849.608 kb on - strandat 2849.608 kb on - strandat 2849.638 kb on + strandat 2849.638 kb on + strandat 2849.639 kb on - strandat 2849.653 kb on + strandat 2849.653 kb on + strandat 2849.653 kb on + strandat 2849.653 kb on + strandat 2849.654 kb on - strandat 2849.654 kb on - strandat 2849.654 kb on - strandat 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.725 kb on + strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.726 kb on - strand, within Xcc-8004.2925.1at 2849.815 kb on + strand, within Xcc-8004.2925.1at 2849.815 kb on + strand, within Xcc-8004.2925.1at 2849.816 kb on - strand, within Xcc-8004.2925.1at 2849.816 kb on - strand, within Xcc-8004.2925.1at 2849.816 kb on - strand, within Xcc-8004.2925.1at 2849.816 kb on - strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.821 kb on + strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.822 kb on - strand, within Xcc-8004.2925.1at 2849.863 kb on + strand, within Xcc-8004.2925.1at 2849.863 kb on + strand, within Xcc-8004.2925.1at 2849.863 kb on + strand, within Xcc-8004.2925.1at 2849.863 kb on + strand, within Xcc-8004.2925.1at 2849.863 kb on + strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.864 kb on - strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.872 kb on + strand, within Xcc-8004.2925.1at 2849.873 kb on - strand, within Xcc-8004.2925.1at 2849.873 kb on - strand, within Xcc-8004.2925.1at 2849.873 kb on - strand, within Xcc-8004.2925.1at 2849.873 kb on - strand, within Xcc-8004.2925.1at 2849.911 kb on + strand, within Xcc-8004.2925.1at 2849.911 kb on + strand, within Xcc-8004.2925.1at 2849.911 kb on + strand, within Xcc-8004.2925.1at 2849.911 kb on + strand, within Xcc-8004.2925.1at 2849.911 kb on + strand, within Xcc-8004.2925.1at 2849.912 kb on - strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.097 kb on + strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.098 kb on - strand, within Xcc-8004.2925.1at 2850.369 kb on - strand, within Xcc-8004.2926.1at 2850.369 kb on - strand, within Xcc-8004.2926.1at 2850.404 kb on + strand, within Xcc-8004.2926.1at 2850.404 kb on + strand, within Xcc-8004.2926.1at 2850.441 kb on + strand, within Xcc-8004.2926.1at 2850.449 kb on + strand, within Xcc-8004.2926.1at 2850.449 kb on + strand, within Xcc-8004.2926.1at 2850.449 kb on + strand, within Xcc-8004.2926.1at 2850.449 kb on + strand, within Xcc-8004.2926.1at 2850.449 kb on + strand, within Xcc-8004.2926.1at 2850.450 kb on - strand, within Xcc-8004.2926.1at 2850.450 kb on - strand, within Xcc-8004.2926.1at 2850.533 kb on + strandat 2850.533 kb on + strandat 2850.533 kb on + strandat 2850.534 kb on - strandat 2850.534 kb on - strandat 2850.534 kb on - strandat 2850.586 kb on + strandat 2850.587 kb on - strandat 2850.662 kb on - strandat 2850.662 kb on - strandat 2850.662 kb on - strandat 2850.665 kb on + strandat 2850.665 kb on + strandat 2850.665 kb on + strandat 2850.666 kb on - strandat 2850.722 kb on + strandat 2850.723 kb on - strandat 2851.231 kb on + strand, within Xcc-8004.2927.1at 2851.231 kb on + strand, within Xcc-8004.2927.1at 2851.231 kb on + strand, within Xcc-8004.2927.1at 2851.232 kb on - strand, within Xcc-8004.2927.1at 2851.232 kb on - strand, within Xcc-8004.2927.1at 2851.232 kb on - strand, within Xcc-8004.2927.1at 2851.232 kb on - strand, within Xcc-8004.2927.1at 2851.367 kb on + strand, within Xcc-8004.2927.1at 2851.368 kb on - strand, within Xcc-8004.2927.1at 2851.391 kb on + strand, within Xcc-8004.2927.1at 2851.391 kb on + strand, within Xcc-8004.2927.1at 2851.392 kb on - strand, within Xcc-8004.2927.1at 2851.392 kb on - strand, within Xcc-8004.2927.1at 2851.392 kb on - strand, within Xcc-8004.2927.1at 2851.392 kb on - strand, within Xcc-8004.2927.1at 2851.394 kb on + strand, within Xcc-8004.2927.1at 2851.541 kb on + strand, within Xcc-8004.2927.1at 2851.542 kb on - strand, within Xcc-8004.2927.1at 2851.542 kb on - strand, within Xcc-8004.2927.1at 2851.542 kb on - strand, within Xcc-8004.2927.1at 2851.542 kb on - strand, within Xcc-8004.2927.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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2,849,184 + Xcc-8004.2924.1 0.59 -1.0
2,849,184 + Xcc-8004.2924.1 0.59 +3.4
2,849,185 - Xcc-8004.2924.1 0.59 -1.1
2,849,185 - Xcc-8004.2924.1 0.59 +1.2
2,849,185 - Xcc-8004.2924.1 0.59 +0.6
2,849,185 - Xcc-8004.2924.1 0.59 +4.7
2,849,211 + Xcc-8004.2924.1 0.63 +0.8
2,849,212 - Xcc-8004.2924.1 0.63 -1.4
2,849,212 - Xcc-8004.2924.1 0.63 +0.5
2,849,406 + Xcc-8004.2924.1 0.88 -0.4
2,849,442 + -0.2
2,849,442 + -0.5
2,849,443 - +0.1
2,849,496 + -0.6
2,849,497 - -1.1
2,849,497 - +0.4
2,849,497 - -0.5
2,849,497 - +0.3
2,849,497 - +0.0
2,849,497 - +0.4
2,849,608 - +0.9
2,849,608 - +0.7
2,849,638 + -0.9
2,849,638 + +0.8
2,849,639 - +1.1
2,849,653 + +2.1
2,849,653 + +0.6
2,849,653 + -1.8
2,849,653 + -0.2
2,849,654 - -0.1
2,849,654 - +0.7
2,849,654 - +0.3
2,849,725 + Xcc-8004.2925.1 0.22 +0.1
2,849,725 + Xcc-8004.2925.1 0.22 -1.6
2,849,725 + Xcc-8004.2925.1 0.22 +0.5
2,849,725 + Xcc-8004.2925.1 0.22 -0.8
2,849,725 + Xcc-8004.2925.1 0.22 +0.8
2,849,725 + Xcc-8004.2925.1 0.22 -0.5
2,849,725 + Xcc-8004.2925.1 0.22 +1.3
2,849,725 + Xcc-8004.2925.1 0.22 -0.2
2,849,726 - Xcc-8004.2925.1 0.22 +0.2
2,849,726 - Xcc-8004.2925.1 0.22 -0.7
2,849,726 - Xcc-8004.2925.1 0.22 -0.7
2,849,726 - Xcc-8004.2925.1 0.22 -0.6
2,849,726 - Xcc-8004.2925.1 0.22 +0.6
2,849,726 - Xcc-8004.2925.1 0.22 +0.3
2,849,726 - Xcc-8004.2925.1 0.22 +1.3
2,849,726 - Xcc-8004.2925.1 0.22 -0.2
2,849,726 - Xcc-8004.2925.1 0.22 +1.2
2,849,726 - Xcc-8004.2925.1 0.22 +0.8
2,849,726 - Xcc-8004.2925.1 0.22 +0.2
2,849,726 - Xcc-8004.2925.1 0.22 -1.8
2,849,815 + Xcc-8004.2925.1 0.38 -0.6
2,849,815 + Xcc-8004.2925.1 0.38 +1.7
2,849,816 - Xcc-8004.2925.1 0.38 +0.1
2,849,816 - Xcc-8004.2925.1 0.38 +2.3
2,849,816 - Xcc-8004.2925.1 0.38 -0.3
2,849,816 - Xcc-8004.2925.1 0.38 -0.5
2,849,821 + Xcc-8004.2925.1 0.39 +2.5
2,849,821 + Xcc-8004.2925.1 0.39 -0.5
2,849,821 + Xcc-8004.2925.1 0.39 +0.7
2,849,821 + Xcc-8004.2925.1 0.39 +0.0
2,849,821 + Xcc-8004.2925.1 0.39 -1.3
2,849,821 + Xcc-8004.2925.1 0.39 -1.0
2,849,822 - Xcc-8004.2925.1 0.39 -0.2
2,849,822 - Xcc-8004.2925.1 0.39 +1.7
2,849,822 - Xcc-8004.2925.1 0.39 -0.1
2,849,822 - Xcc-8004.2925.1 0.39 -1.6
2,849,822 - Xcc-8004.2925.1 0.39 +0.7
2,849,822 - Xcc-8004.2925.1 0.39 -0.9
2,849,822 - Xcc-8004.2925.1 0.39 +0.5
2,849,863 + Xcc-8004.2925.1 0.47 -1.1
2,849,863 + Xcc-8004.2925.1 0.47 -0.5
2,849,863 + Xcc-8004.2925.1 0.47 -0.3
2,849,863 + Xcc-8004.2925.1 0.47 -0.9
2,849,863 + Xcc-8004.2925.1 0.47 +2.1
2,849,864 - Xcc-8004.2925.1 0.47 -2.0
2,849,864 - Xcc-8004.2925.1 0.47 +1.1
2,849,864 - Xcc-8004.2925.1 0.47 +0.9
2,849,864 - Xcc-8004.2925.1 0.47 -1.1
2,849,864 - Xcc-8004.2925.1 0.47 +0.4
2,849,864 - Xcc-8004.2925.1 0.47 +1.7
2,849,864 - Xcc-8004.2925.1 0.47 +0.6
2,849,864 - Xcc-8004.2925.1 0.47 -0.5
2,849,872 + Xcc-8004.2925.1 0.48 -0.7
2,849,872 + Xcc-8004.2925.1 0.48 +0.2
2,849,872 + Xcc-8004.2925.1 0.48 +0.2
2,849,872 + Xcc-8004.2925.1 0.48 -0.3
2,849,872 + Xcc-8004.2925.1 0.48 +0.5
2,849,872 + Xcc-8004.2925.1 0.48 +1.1
2,849,872 + Xcc-8004.2925.1 0.48 +0.6
2,849,873 - Xcc-8004.2925.1 0.48 -1.2
2,849,873 - Xcc-8004.2925.1 0.48 -0.7
2,849,873 - Xcc-8004.2925.1 0.48 -1.3
2,849,873 - Xcc-8004.2925.1 0.48 +0.6
2,849,911 + Xcc-8004.2925.1 0.55 -0.4
2,849,911 + Xcc-8004.2925.1 0.55 -1.7
2,849,911 + Xcc-8004.2925.1 0.55 +0.5
2,849,911 + Xcc-8004.2925.1 0.55 -0.4
2,849,911 + Xcc-8004.2925.1 0.55 +1.2
2,849,912 - Xcc-8004.2925.1 0.55 +0.6
2,850,097 + Xcc-8004.2925.1 0.88 +1.3
2,850,097 + Xcc-8004.2925.1 0.88 -1.6
2,850,097 + Xcc-8004.2925.1 0.88 -1.0
2,850,097 + Xcc-8004.2925.1 0.88 -0.0
2,850,097 + Xcc-8004.2925.1 0.88 -0.8
2,850,097 + Xcc-8004.2925.1 0.88 +1.3
2,850,098 - Xcc-8004.2925.1 0.88 +0.4
2,850,098 - Xcc-8004.2925.1 0.88 -0.6
2,850,098 - Xcc-8004.2925.1 0.88 +0.6
2,850,098 - Xcc-8004.2925.1 0.88 -0.2
2,850,098 - Xcc-8004.2925.1 0.88 -1.1
2,850,098 - Xcc-8004.2925.1 0.88 -2.6
2,850,369 - Xcc-8004.2926.1 0.50 +0.1
2,850,369 - Xcc-8004.2926.1 0.50 +0.2
2,850,404 + Xcc-8004.2926.1 0.59 -1.2
2,850,404 + Xcc-8004.2926.1 0.59 +1.9
2,850,441 + Xcc-8004.2926.1 0.68 -0.2
2,850,449 + Xcc-8004.2926.1 0.70 +2.8
2,850,449 + Xcc-8004.2926.1 0.70 -0.7
2,850,449 + Xcc-8004.2926.1 0.70 +0.7
2,850,449 + Xcc-8004.2926.1 0.70 +0.9
2,850,449 + Xcc-8004.2926.1 0.70 +1.6
2,850,450 - Xcc-8004.2926.1 0.70 +1.2
2,850,450 - Xcc-8004.2926.1 0.70 -0.6
2,850,533 + +1.7
2,850,533 + -0.3
2,850,533 + -3.0
2,850,534 - -0.1
2,850,534 - -2.9
2,850,534 - -2.4
2,850,586 + +0.9
2,850,587 - -1.2
2,850,662 - -0.0
2,850,662 - +0.4
2,850,662 - +1.2
2,850,665 + -1.0
2,850,665 + -0.6
2,850,665 + +1.1
2,850,666 - +0.5
2,850,722 + +0.8
2,850,723 - -0.0
2,851,231 + Xcc-8004.2927.1 0.22 +0.1
2,851,231 + Xcc-8004.2927.1 0.22 -0.2
2,851,231 + Xcc-8004.2927.1 0.22 -0.4
2,851,232 - Xcc-8004.2927.1 0.22 -2.7
2,851,232 - Xcc-8004.2927.1 0.22 -0.8
2,851,232 - Xcc-8004.2927.1 0.22 -0.8
2,851,232 - Xcc-8004.2927.1 0.22 +0.2
2,851,367 + Xcc-8004.2927.1 0.29 -2.7
2,851,368 - Xcc-8004.2927.1 0.30 -0.0
2,851,391 + Xcc-8004.2927.1 0.31 +1.8
2,851,391 + Xcc-8004.2927.1 0.31 -0.1
2,851,392 - Xcc-8004.2927.1 0.31 -0.0
2,851,392 - Xcc-8004.2927.1 0.31 -1.5
2,851,392 - Xcc-8004.2927.1 0.31 -1.2
2,851,392 - Xcc-8004.2927.1 0.31 -0.6
2,851,394 + Xcc-8004.2927.1 0.31 +0.3
2,851,541 + Xcc-8004.2927.1 0.39 +0.2
2,851,542 - Xcc-8004.2927.1 0.39 +1.4
2,851,542 - Xcc-8004.2927.1 0.39 -1.5
2,851,542 - Xcc-8004.2927.1 0.39 -0.7
2,851,542 - Xcc-8004.2927.1 0.39 -1.6

Or see this region's nucleotide sequence