Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1624.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1622.1 and Xcc-8004.1623.1 are separated by 12 nucleotidesXcc-8004.1623.1 and Xcc-8004.1624.1 are separated by 1 nucleotidesXcc-8004.1624.1 and Xcc-8004.1625.1 are separated by 193 nucleotidesXcc-8004.1625.1 and Xcc-8004.1626.1 are separated by 372 nucleotides Xcc-8004.1622.1: Xcc-8004.1622.1 - Membrane protein with DUF350 domain, at 1,562,037 to 1,562,441 Xcc-8004.1622.1 Xcc-8004.1623.1: Xcc-8004.1623.1 - probable lipoprotein, at 1,562,454 to 1,563,029 Xcc-8004.1623.1 Xcc-8004.1624.1: Xcc-8004.1624.1 - synthetase/amidase, at 1,563,031 to 1,564,197 Xcc-8004.1624.1 Xcc-8004.1625.1: Xcc-8004.1625.1 - hypothetical protein, at 1,564,391 to 1,564,510 Xcc-8004.1625.1 Xcc-8004.1626.1: Xcc-8004.1626.1 - MFS transporter, at 1,564,883 to 1,566,253 Xcc-8004.1626.1 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1562.079 kb on + strand, within Xcc-8004.1622.1at 1562.310 kb on + strand, within Xcc-8004.1622.1at 1562.310 kb on + strand, within Xcc-8004.1622.1at 1562.311 kb on - strand, within Xcc-8004.1622.1at 1562.572 kb on - strand, within Xcc-8004.1623.1at 1562.619 kb on + strand, within Xcc-8004.1623.1at 1562.619 kb on + strand, within Xcc-8004.1623.1at 1562.620 kb on - strand, within Xcc-8004.1623.1at 1562.809 kb on - strand, within Xcc-8004.1623.1at 1562.827 kb on + strand, within Xcc-8004.1623.1at 1562.829 kb on + strand, within Xcc-8004.1623.1at 1562.856 kb on + strand, within Xcc-8004.1623.1at 1562.856 kb on + strand, within Xcc-8004.1623.1at 1562.856 kb on + strand, within Xcc-8004.1623.1at 1562.857 kb on - strand, within Xcc-8004.1623.1at 1562.857 kb on - strand, within Xcc-8004.1623.1at 1563.039 kb on + strandat 1563.039 kb on + strandat 1563.040 kb on - strandat 1563.040 kb on - strandat 1563.040 kb on - strandat 1563.121 kb on + strandat 1563.122 kb on - strandat 1563.122 kb on - strandat 1563.142 kb on + strandat 1563.325 kb on + strand, within Xcc-8004.1624.1at 1563.326 kb on - strand, within Xcc-8004.1624.1at 1563.347 kb on - strand, within Xcc-8004.1624.1at 1563.373 kb on + strand, within Xcc-8004.1624.1at 1563.373 kb on + strand, within Xcc-8004.1624.1at 1563.373 kb on + strand, within Xcc-8004.1624.1at 1563.373 kb on + strand, within Xcc-8004.1624.1at 1563.374 kb on - strand, within Xcc-8004.1624.1at 1563.374 kb on - strand, within Xcc-8004.1624.1at 1563.385 kb on + strand, within Xcc-8004.1624.1at 1563.386 kb on - strand, within Xcc-8004.1624.1at 1563.406 kb on + strand, within Xcc-8004.1624.1at 1563.406 kb on + strand, within Xcc-8004.1624.1at 1563.406 kb on + strand, within Xcc-8004.1624.1at 1563.484 kb on + strand, within Xcc-8004.1624.1at 1563.484 kb on + strand, within Xcc-8004.1624.1at 1563.484 kb on + strand, within Xcc-8004.1624.1at 1563.485 kb on - strand, within Xcc-8004.1624.1at 1563.736 kb on + strand, within Xcc-8004.1624.1at 1564.207 kb on - strandat 1564.272 kb on - strandat 1564.388 kb on + strandat 1564.388 kb on + strandat 1564.388 kb on + strandat 1564.389 kb on - strandat 1564.389 kb on - strandat 1564.951 kb on - strandat 1565.112 kb on + strand, within Xcc-8004.1626.1at 1565.113 kb on - strand, within Xcc-8004.1626.1at 1565.113 kb on - strand, within Xcc-8004.1626.1at 1565.113 kb on - strand, within Xcc-8004.1626.1at 1565.113 kb on - strand, within Xcc-8004.1626.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,562,079 + Xcc-8004.1622.1 0.10 +1.8
1,562,310 + Xcc-8004.1622.1 0.67 -2.1
1,562,310 + Xcc-8004.1622.1 0.67 -0.7
1,562,311 - Xcc-8004.1622.1 0.68 +0.5
1,562,572 - Xcc-8004.1623.1 0.20 +1.2
1,562,619 + Xcc-8004.1623.1 0.29 +0.0
1,562,619 + Xcc-8004.1623.1 0.29 +0.7
1,562,620 - Xcc-8004.1623.1 0.29 +0.2
1,562,809 - Xcc-8004.1623.1 0.62 +1.7
1,562,827 + Xcc-8004.1623.1 0.65 -0.2
1,562,829 + Xcc-8004.1623.1 0.65 +3.3
1,562,856 + Xcc-8004.1623.1 0.70 -0.6
1,562,856 + Xcc-8004.1623.1 0.70 -1.1
1,562,856 + Xcc-8004.1623.1 0.70 +0.9
1,562,857 - Xcc-8004.1623.1 0.70 +1.2
1,562,857 - Xcc-8004.1623.1 0.70 -0.9
1,563,039 + +0.9
1,563,039 + -1.1
1,563,040 - -0.6
1,563,040 - +2.8
1,563,040 - -2.2
1,563,121 + -1.2
1,563,122 - -0.3
1,563,122 - -0.5
1,563,142 + +0.9
1,563,325 + Xcc-8004.1624.1 0.25 +1.8
1,563,326 - Xcc-8004.1624.1 0.25 -0.9
1,563,347 - Xcc-8004.1624.1 0.27 +1.2
1,563,373 + Xcc-8004.1624.1 0.29 +0.9
1,563,373 + Xcc-8004.1624.1 0.29 +2.9
1,563,373 + Xcc-8004.1624.1 0.29 +0.7
1,563,373 + Xcc-8004.1624.1 0.29 -0.0
1,563,374 - Xcc-8004.1624.1 0.29 +0.5
1,563,374 - Xcc-8004.1624.1 0.29 +0.8
1,563,385 + Xcc-8004.1624.1 0.30 -0.5
1,563,386 - Xcc-8004.1624.1 0.30 -0.3
1,563,406 + Xcc-8004.1624.1 0.32 -0.6
1,563,406 + Xcc-8004.1624.1 0.32 +1.0
1,563,406 + Xcc-8004.1624.1 0.32 +1.7
1,563,484 + Xcc-8004.1624.1 0.39 -1.3
1,563,484 + Xcc-8004.1624.1 0.39 -0.3
1,563,484 + Xcc-8004.1624.1 0.39 +3.6
1,563,485 - Xcc-8004.1624.1 0.39 -1.3
1,563,736 + Xcc-8004.1624.1 0.60 +0.5
1,564,207 - -1.1
1,564,272 - -0.8
1,564,388 + -0.5
1,564,388 + -0.4
1,564,388 + -1.2
1,564,389 - -1.5
1,564,389 - -0.5
1,564,951 - -0.2
1,565,112 + Xcc-8004.1626.1 0.17 -0.9
1,565,113 - Xcc-8004.1626.1 0.17 -2.7
1,565,113 - Xcc-8004.1626.1 0.17 -0.5
1,565,113 - Xcc-8004.1626.1 0.17 -1.1
1,565,113 - Xcc-8004.1626.1 0.17 +2.0

Or see this region's nucleotide sequence