Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1483.1

Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1482.1 and Xcc-8004.1483.1 are separated by 342 nucleotidesXcc-8004.1483.1 and Xcc-8004.1484.1 are separated by 262 nucleotidesXcc-8004.1484.1 and Xcc-8004.1485.1 are separated by 60 nucleotides Xcc-8004.1482.1: Xcc-8004.1482.1 - predicted N-acetylglucosamine kinase, glucokinase-like (EC 2.7.1.59), at 1,411,310 to 1,412,344 Xcc-8004.1482.1 Xcc-8004.1483.1: Xcc-8004.1483.1 - PhoP/Q-regulated protein PqaA, at 1,412,687 to 1,414,174 Xcc-8004.1483.1 Xcc-8004.1484.1: Xcc-8004.1484.1 - FIG01210307: hypothetical protein, at 1,414,437 to 1,414,949 Xcc-8004.1484.1 Xcc-8004.1485.1: Xcc-8004.1485.1 - Coenzyme PQQ synthesis protein E, at 1,415,010 to 1,416,140 Xcc-8004.1485.1 Position (kb) 1412 1413 1414 1415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.728 kb on + strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.729 kb on - strand, within Xcc-8004.1482.1at 1411.730 kb on - strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.928 kb on + strand, within Xcc-8004.1482.1at 1411.929 kb on - strand, within Xcc-8004.1482.1at 1411.929 kb on - strand, within Xcc-8004.1482.1at 1411.968 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.187 kb on + strand, within Xcc-8004.1482.1at 1412.188 kb on - strand, within Xcc-8004.1482.1at 1412.402 kb on + strandat 1412.403 kb on - strandat 1412.472 kb on - strandat 1412.763 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.784 kb on + strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.785 kb on - strandat 1412.817 kb on + strandat 1412.817 kb on + strandat 1412.818 kb on - strandat 1412.818 kb on - strandat 1412.818 kb on - strandat 1412.835 kb on + strandat 1412.969 kb on + strand, within Xcc-8004.1483.1at 1412.969 kb on + strand, within Xcc-8004.1483.1at 1412.970 kb on - strand, within Xcc-8004.1483.1at 1412.970 kb on - strand, within Xcc-8004.1483.1at 1413.178 kb on - strand, within Xcc-8004.1483.1at 1413.178 kb on - strand, within Xcc-8004.1483.1at 1413.178 kb on - strand, within Xcc-8004.1483.1at 1413.178 kb on - strand, within Xcc-8004.1483.1at 1413.276 kb on + strand, within Xcc-8004.1483.1at 1413.277 kb on - strand, within Xcc-8004.1483.1at 1413.277 kb on - strand, within Xcc-8004.1483.1at 1413.277 kb on - strand, within Xcc-8004.1483.1at 1413.354 kb on + strand, within Xcc-8004.1483.1at 1413.387 kb on + strand, within Xcc-8004.1483.1at 1413.387 kb on + strand, within Xcc-8004.1483.1at 1413.387 kb on + strand, within Xcc-8004.1483.1at 1413.387 kb on + strand, within Xcc-8004.1483.1at 1413.388 kb on - strand, within Xcc-8004.1483.1at 1413.641 kb on - strand, within Xcc-8004.1483.1at 1413.703 kb on - strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.888 kb on + strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.889 kb on - strand, within Xcc-8004.1483.1at 1413.963 kb on + strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1413.964 kb on - strand, within Xcc-8004.1483.1at 1414.003 kb on + strand, within Xcc-8004.1483.1at 1414.004 kb on - strand, within Xcc-8004.1483.1at 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.439 kb on - strandat 1414.471 kb on + strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.472 kb on - strandat 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.489 kb on + strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.490 kb on - strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.600 kb on + strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.601 kb on - strand, within Xcc-8004.1484.1at 1414.900 kb on - strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.981 kb on + strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strandat 1414.982 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes)
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1,411,728 + Xcc-8004.1482.1 0.40 +0.0
1,411,728 + Xcc-8004.1482.1 0.40 +0.1
1,411,728 + Xcc-8004.1482.1 0.40 -0.0
1,411,728 + Xcc-8004.1482.1 0.40 -0.4
1,411,729 - Xcc-8004.1482.1 0.40 -1.1
1,411,729 - Xcc-8004.1482.1 0.40 +0.3
1,411,729 - Xcc-8004.1482.1 0.40 -0.5
1,411,730 - Xcc-8004.1482.1 0.41 -1.5
1,411,928 + Xcc-8004.1482.1 0.60 -1.2
1,411,928 + Xcc-8004.1482.1 0.60 -2.0
1,411,928 + Xcc-8004.1482.1 0.60 -0.5
1,411,929 - Xcc-8004.1482.1 0.60 +1.3
1,411,929 - Xcc-8004.1482.1 0.60 -0.3
1,411,968 + Xcc-8004.1482.1 0.64 +0.0
1,412,187 + Xcc-8004.1482.1 0.85 -1.3
1,412,187 + Xcc-8004.1482.1 0.85 -1.6
1,412,187 + Xcc-8004.1482.1 0.85 +2.3
1,412,188 - Xcc-8004.1482.1 0.85 -0.4
1,412,402 + -0.1
1,412,403 - +0.2
1,412,472 - -0.3
1,412,763 + -3.0
1,412,784 + -1.2
1,412,784 + -0.8
1,412,784 + -0.3
1,412,784 + +0.1
1,412,784 + -0.6
1,412,784 + +0.8
1,412,784 + -1.7
1,412,784 + -0.6
1,412,784 + +0.0
1,412,784 + +0.5
1,412,785 - -0.3
1,412,785 - -0.6
1,412,785 - -0.7
1,412,785 - -0.1
1,412,785 - -3.6
1,412,785 - -0.7
1,412,785 - -0.4
1,412,785 - +0.7
1,412,817 + -0.9
1,412,817 + -1.0
1,412,818 - +0.2
1,412,818 - +0.7
1,412,818 - -1.1
1,412,835 + -1.4
1,412,969 + Xcc-8004.1483.1 0.19 -0.5
1,412,969 + Xcc-8004.1483.1 0.19 -0.5
1,412,970 - Xcc-8004.1483.1 0.19 +0.4
1,412,970 - Xcc-8004.1483.1 0.19 -0.3
1,413,178 - Xcc-8004.1483.1 0.33 +0.5
1,413,178 - Xcc-8004.1483.1 0.33 +0.0
1,413,178 - Xcc-8004.1483.1 0.33 +0.7
1,413,178 - Xcc-8004.1483.1 0.33 +0.8
1,413,276 + Xcc-8004.1483.1 0.40 -2.4
1,413,277 - Xcc-8004.1483.1 0.40 -1.1
1,413,277 - Xcc-8004.1483.1 0.40 +0.1
1,413,277 - Xcc-8004.1483.1 0.40 +1.5
1,413,354 + Xcc-8004.1483.1 0.45 +0.9
1,413,387 + Xcc-8004.1483.1 0.47 +1.0
1,413,387 + Xcc-8004.1483.1 0.47 -0.5
1,413,387 + Xcc-8004.1483.1 0.47 -1.8
1,413,387 + Xcc-8004.1483.1 0.47 -1.5
1,413,388 - Xcc-8004.1483.1 0.47 -0.4
1,413,641 - Xcc-8004.1483.1 0.64 +0.2
1,413,703 - Xcc-8004.1483.1 0.68 -2.8
1,413,888 + Xcc-8004.1483.1 0.81 -0.2
1,413,888 + Xcc-8004.1483.1 0.81 -1.1
1,413,888 + Xcc-8004.1483.1 0.81 -0.6
1,413,888 + Xcc-8004.1483.1 0.81 -1.5
1,413,889 - Xcc-8004.1483.1 0.81 +1.5
1,413,889 - Xcc-8004.1483.1 0.81 -1.8
1,413,889 - Xcc-8004.1483.1 0.81 +1.2
1,413,889 - Xcc-8004.1483.1 0.81 -0.5
1,413,963 + Xcc-8004.1483.1 0.86 +0.1
1,413,964 - Xcc-8004.1483.1 0.86 -0.1
1,413,964 - Xcc-8004.1483.1 0.86 +1.2
1,413,964 - Xcc-8004.1483.1 0.86 -1.6
1,413,964 - Xcc-8004.1483.1 0.86 -0.9
1,414,003 + Xcc-8004.1483.1 0.88 +0.9
1,414,004 - Xcc-8004.1483.1 0.89 -1.0
1,414,439 - +0.5
1,414,439 - -0.2
1,414,439 - +2.2
1,414,439 - +0.4
1,414,471 + -0.4
1,414,472 - -2.0
1,414,472 - +0.9
1,414,472 - -0.3
1,414,489 + Xcc-8004.1484.1 0.10 +2.3
1,414,489 + Xcc-8004.1484.1 0.10 +1.7
1,414,489 + Xcc-8004.1484.1 0.10 +0.7
1,414,489 + Xcc-8004.1484.1 0.10 -0.9
1,414,489 + Xcc-8004.1484.1 0.10 -0.3
1,414,490 - Xcc-8004.1484.1 0.10 +0.3
1,414,490 - Xcc-8004.1484.1 0.10 -1.5
1,414,490 - Xcc-8004.1484.1 0.10 -0.0
1,414,490 - Xcc-8004.1484.1 0.10 -1.5
1,414,490 - Xcc-8004.1484.1 0.10 +0.1
1,414,490 - Xcc-8004.1484.1 0.10 -1.1
1,414,600 + Xcc-8004.1484.1 0.32 -0.1
1,414,600 + Xcc-8004.1484.1 0.32 +0.4
1,414,600 + Xcc-8004.1484.1 0.32 +0.5
1,414,601 - Xcc-8004.1484.1 0.32 +0.6
1,414,601 - Xcc-8004.1484.1 0.32 -0.0
1,414,601 - Xcc-8004.1484.1 0.32 -0.9
1,414,601 - Xcc-8004.1484.1 0.32 -1.1
1,414,900 - -1.7
1,414,981 + +0.9
1,414,981 + +0.7
1,414,981 + +0.5
1,414,981 + -0.0
1,414,981 + +0.8
1,414,982 - -0.3
1,414,982 - +0.1
1,414,982 - -0.4
1,414,982 - -0.8
1,414,982 - -0.1

Or see this region's nucleotide sequence