Experiment: Xylemvessel barcodes Location 2 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1208.1 and Xcc-8004.1209.1 are separated by 19 nucleotides Xcc-8004.1209.1 and Xcc-8004.1210.1 are separated by 117 nucleotides
Xcc-8004.1208.1: Xcc-8004.1208.1 - Glucarate dehydratase (EC 4.2.1.40), at 1,142,266 to 1,143,621
Xcc-8004.1208.1
Xcc-8004.1209.1: Xcc-8004.1209.1 - D-galactarate permease, at 1,143,641 to 1,145,002
Xcc-8004.1209.1
Xcc-8004.1210.1: Xcc-8004.1210.1 - D-Glucuronolactone:NAD+ oxidoreductase (EC 1.2.1.3), at 1,145,120 to 1,146,700
Xcc-8004.1210.1
Position (kb) 1143
1144
1145
1146 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1142.680 kb on - strand, within Xcc-8004.1208.1 at 1142.680 kb on - strand, within Xcc-8004.1208.1 at 1142.910 kb on + strand, within Xcc-8004.1208.1 at 1143.008 kb on + strand, within Xcc-8004.1208.1 at 1143.008 kb on + strand, within Xcc-8004.1208.1 at 1143.008 kb on + strand, within Xcc-8004.1208.1 at 1143.008 kb on + strand, within Xcc-8004.1208.1 at 1143.008 kb on + strand, within Xcc-8004.1208.1 at 1143.156 kb on - strand, within Xcc-8004.1208.1 at 1143.366 kb on - strand, within Xcc-8004.1208.1 at 1143.500 kb on + strand at 1143.500 kb on + strand at 1143.501 kb on - strand at 1143.988 kb on - strand, within Xcc-8004.1209.1 at 1143.988 kb on - strand, within Xcc-8004.1209.1 at 1144.188 kb on + strand, within Xcc-8004.1209.1 at 1144.215 kb on + strand, within Xcc-8004.1209.1 at 1144.216 kb on - strand, within Xcc-8004.1209.1 at 1144.248 kb on + strand, within Xcc-8004.1209.1 at 1144.249 kb on - strand, within Xcc-8004.1209.1 at 1144.249 kb on - strand, within Xcc-8004.1209.1 at 1144.371 kb on + strand, within Xcc-8004.1209.1 at 1144.371 kb on + strand, within Xcc-8004.1209.1 at 1144.372 kb on - strand, within Xcc-8004.1209.1 at 1144.372 kb on - strand, within Xcc-8004.1209.1 at 1144.416 kb on + strand, within Xcc-8004.1209.1 at 1144.416 kb on + strand, within Xcc-8004.1209.1 at 1144.417 kb on - strand, within Xcc-8004.1209.1 at 1144.417 kb on - strand, within Xcc-8004.1209.1 at 1144.417 kb on - strand, within Xcc-8004.1209.1 at 1144.417 kb on - strand, within Xcc-8004.1209.1 at 1144.417 kb on - strand, within Xcc-8004.1209.1 at 1144.758 kb on + strand, within Xcc-8004.1209.1 at 1144.818 kb on + strand, within Xcc-8004.1209.1 at 1144.818 kb on + strand, within Xcc-8004.1209.1 at 1144.818 kb on + strand, within Xcc-8004.1209.1 at 1144.819 kb on - strand, within Xcc-8004.1209.1 at 1144.923 kb on + strand at 1144.923 kb on + strand at 1144.924 kb on - strand at 1145.017 kb on + strand at 1145.018 kb on - strand at 1145.018 kb on - strand at 1145.046 kb on + strand at 1145.157 kb on - strand at 1145.217 kb on + strand at 1145.667 kb on + strand, within Xcc-8004.1210.1 at 1145.880 kb on + strand, within Xcc-8004.1210.1 at 1145.881 kb on - strand, within Xcc-8004.1210.1 at 1145.910 kb on + strand, within Xcc-8004.1210.1 at 1145.910 kb on + strand, within Xcc-8004.1210.1 at 1145.911 kb on - strand, within Xcc-8004.1210.1 at 1145.911 kb on - strand, within Xcc-8004.1210.1 at 1145.911 kb on - strand, within Xcc-8004.1210.1 at 1145.911 kb on - strand, within Xcc-8004.1210.1 at 1145.948 kb on + strand, within Xcc-8004.1210.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 2 6 dpi (25 plantes) remove 1,142,680 - Xcc-8004.1208.1 0.31 +0.6 1,142,680 - Xcc-8004.1208.1 0.31 +0.3 1,142,910 + Xcc-8004.1208.1 0.47 +1.7 1,143,008 + Xcc-8004.1208.1 0.55 -3.0 1,143,008 + Xcc-8004.1208.1 0.55 +1.5 1,143,008 + Xcc-8004.1208.1 0.55 +0.7 1,143,008 + Xcc-8004.1208.1 0.55 +2.3 1,143,008 + Xcc-8004.1208.1 0.55 +0.1 1,143,156 - Xcc-8004.1208.1 0.66 -1.1 1,143,366 - Xcc-8004.1208.1 0.81 -1.5 1,143,500 + -0.0 1,143,500 + -1.6 1,143,501 - -0.2 1,143,988 - Xcc-8004.1209.1 0.25 -1.3 1,143,988 - Xcc-8004.1209.1 0.25 +0.3 1,144,188 + Xcc-8004.1209.1 0.40 -1.7 1,144,215 + Xcc-8004.1209.1 0.42 +1.3 1,144,216 - Xcc-8004.1209.1 0.42 -0.4 1,144,248 + Xcc-8004.1209.1 0.45 -1.1 1,144,249 - Xcc-8004.1209.1 0.45 +0.2 1,144,249 - Xcc-8004.1209.1 0.45 +1.3 1,144,371 + Xcc-8004.1209.1 0.54 -0.7 1,144,371 + Xcc-8004.1209.1 0.54 -1.7 1,144,372 - Xcc-8004.1209.1 0.54 +0.7 1,144,372 - Xcc-8004.1209.1 0.54 +1.1 1,144,416 + Xcc-8004.1209.1 0.57 +0.5 1,144,416 + Xcc-8004.1209.1 0.57 -2.4 1,144,417 - Xcc-8004.1209.1 0.57 +0.3 1,144,417 - Xcc-8004.1209.1 0.57 +0.0 1,144,417 - Xcc-8004.1209.1 0.57 +0.8 1,144,417 - Xcc-8004.1209.1 0.57 -0.7 1,144,417 - Xcc-8004.1209.1 0.57 +1.5 1,144,758 + Xcc-8004.1209.1 0.82 +0.9 1,144,818 + Xcc-8004.1209.1 0.86 -1.9 1,144,818 + Xcc-8004.1209.1 0.86 -0.6 1,144,818 + Xcc-8004.1209.1 0.86 -1.8 1,144,819 - Xcc-8004.1209.1 0.86 -1.8 1,144,923 + +0.6 1,144,923 + -1.0 1,144,924 - -0.7 1,145,017 + -0.2 1,145,018 - +1.0 1,145,018 - +1.1 1,145,046 + -1.7 1,145,157 - -0.3 1,145,217 + +0.9 1,145,667 + Xcc-8004.1210.1 0.35 -0.1 1,145,880 + Xcc-8004.1210.1 0.48 +2.3 1,145,881 - Xcc-8004.1210.1 0.48 +1.9 1,145,910 + Xcc-8004.1210.1 0.50 -0.9 1,145,910 + Xcc-8004.1210.1 0.50 +1.2 1,145,911 - Xcc-8004.1210.1 0.50 +1.8 1,145,911 - Xcc-8004.1210.1 0.50 -1.4 1,145,911 - Xcc-8004.1210.1 0.50 +0.6 1,145,911 - Xcc-8004.1210.1 0.50 +0.4 1,145,948 + Xcc-8004.1210.1 0.52 -0.0
Or see this region's nucleotide sequence